Browse Element(s) Details


OsAffx.6391.1.S1_at

Description tigr:9637.m02164
TID=OsAffx.6391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2513010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25120NANA9+15033926..15040081transposon protein, putative, unclassified
LOC_Os09g25130OsAffx.6391.1.S1_at10/119+15059396..15060349hypothetical protein
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6391.1.S1_at--760--7451Chr09:15059427..15059451 (25 bp)
GTGTCGCGAGGTACTCGTACCACAG
LOC_Os09g25130
OsAffx.6391.1.S1_at--877--6151Chr09:15059434..15059458 (25 bp)
GAGGTACTCGTACCACAGTGTGTCC
LOC_Os09g25130
OsAffx.6391.1.S1_at--410--9911Chr09:15059438..15059462 (25 bp)
TACTCGTACCACAGTGTGTCCTCAT
LOC_Os09g25130
OsAffx.6391.1.S1_at--608--9271Chr09:15059472..15059496 (25 bp)
TCCTGTCCAGGAAGAGACGAACACT
LOC_Os09g25130
OsAffx.6391.1.S1_at--12--7251Chr09:15059476..15059500 (25 bp)
GTCCAGGAAGAGACGAACACTGTCT
LOC_Os09g25130
OsAffx.6391.1.S1_at--391--3491Chr09:15059479..15059503 (25 bp)
CAGGAAGAGACGAACACTGTCTGGG
LOC_Os09g25130
OsAffx.6391.1.S1_at--515--7171Chr09:15059497..15059521 (25 bp)
GTCTGGGGTTTCTCCTCGACATGAA
LOC_Os09g25130
OsAffx.6391.1.S1_at--539--4291NONE
CCTCGACATGAAGTCATCTATTTTG
NONE
OsAffx.6391.1.S1_at--760--5331Chr09:15060182..15060204 (23 bp)
GAAGTCATCTATTTTGCACTTGGAT
LOC_Os09g25130
OsAffx.6391.1.S1_at--690--6511Chr09:15060202..15060226 (25 bp)
GATTTGGATATGGTGCACTCGGTAG
LOC_Os09g25130
OsAffx.6391.1.S1_at--1005--211Chr09:15060203..15060227 (25 bp)
ATTTGGATATGGTGCACTCGGTAGT
LOC_Os09g25130
Target Sequence 
GTGTCGCGAGGTACTCGTACCACAGTGTGTCCTCATCCCCTCTGCTCCTGTCCAGGAAGAGACGAACACTGTCTGGGGTT
TCTCCTCGACATGAAGTCATCTATTTTGCACTTGGATTTGGATATGGTGCACTCGGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis