Browse Element(s) Details


Os.27861.1.S2_a_at

Description gb:AK068557.1
DB_XREF= gi:32978574
TID=Os.27861.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154M23, full insert sequence.
FL= gb:AK058417.1 gb:AK068557.1 gb:AK121336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2513911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25120NANA9+15033926..15040081transposon protein, putative, unclassified
LOC_Os09g25130OsAffx.6391.1.S1_at10/119+15059396..15060349hypothetical protein
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27861.1.S2_a_at--489--1971Chr09:15070491..15070515 (25 bp)
ACTGTTGTACGTATCTGTTATTGAA
LOC_Os09g25139
Os.27861.1.S2_a_at--828--6831Chr09:15070648..15070672 (25 bp)
GTTTCTTCTGTCATGTCTGAATATG
LOC_Os09g25139
Os.27861.1.S2_a_at--593--10251Chr09:15070684..15070708 (25 bp)
TTTGTGCTCACTTATATACCCTGGT
LOC_Os09g25139
Os.27861.1.S2_a_at--314--10171Chr09:15070774..15070798 (25 bp)
TATACTTTTAGTTCTTGCCTCGGTG
LOC_Os09g25139
Os.27861.1.S2_a_at--729--5471Chr09:15070814..15070838 (25 bp)
GAACTCTCATGCAGTTTCTCTTGAA
LOC_Os09g25139
Os.27861.1.S2_a_at--219--7871Chr09:15070854..15070878 (25 bp)
GGTATACGTACCATAAATGCCAACA
LOC_Os09g25139
Os.27861.1.S2_a_at--969--9771Chr09:15070882..15070906 (25 bp)
TAAGAATTCTTCTCTGGGCTGCCCA
LOC_Os09g25139
Os.27861.1.S2_a_at--833--7571Chr09:15070897..15070921 (25 bp)
GGGCTGCCCAGAAATCATTGCCAGT
LOC_Os09g25139
Os.27861.1.S2_a_at--498--3011Chr09:15070909..15070933 (25 bp)
AATCATTGCCAGTTTTATTACGACA
LOC_Os09g25139
Os.27861.1.S2_a_at--460--9951Chr09:15070927..15070951 (25 bp)
TACGACAATTCATTCTCCAGTCTGT
LOC_Os09g25139
Os.27861.1.S2_a_at--766--8331Chr09:15071002..15071026 (25 bp)
GGCTGTATTTATCTTTCACCTTGTG
LOC_Os09g25139
Target Sequence 
ACTGTTGTACGTATCTGTTATTGAATGGAATTCTGAATAACATGATCCACTTTGTTNGTNACATGTCTTANCTACATCNA
TCTCTTNGATGTGTCGATGGTGAATCNGGCAAGTAAAATAACCTGGTATTTATGACTTTATGTTTGGTAAGCATCATCCA
TTGTTTCTTCTGTCATGTCTGAATATGTAGCTTCATATTTTGTGCTCACTTATATACCCTGGTGATGTCTATCNGATGTA
GGGTTGTTTGCTTATGTTTATGCTTTTCGTTCTTTTATTTTCGAGGATTATACTTTTAGTTCTTGCCTCGGTGCCTCATT
CCCTGCTTGAACTCTCATGCAGTTTCTCTTGAAGAATTTTGACACGTTGGTATACGTACCATAAATGCCAACAAATTAAG
AATTCTTCTCTGGGCTGCCCAGAAATCATTGCCAGTTTTATTACGACAATTCATTCTCCAGTCTGTACTCTGTTAATTTT
ACACTGTGGAATCATCACCATGTAAATTTTGGACATGGCTGTATTTATCTTTCACCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27861.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis