Browse Element(s) Details


Os.27861.1.S1_a_at

Description gb:AK121336.1
DB_XREF= gi:37990959
TID=Os.27861.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119L24, full insert sequence.
FL= gb:AK058417.1 gb:AK068557.1 gb:AK121336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2513911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25120NANA9+15033926..15040081transposon protein, putative, unclassified
LOC_Os09g25130OsAffx.6391.1.S1_at10/119+15059396..15060349hypothetical protein
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27861.1.S1_a_at--969--9591Chr09:15069540..15069564 (25 bp)
TCATTTGCAAAACGTCTCCATCTCA
LOC_Os09g25139
Os.27861.1.S1_a_at--869--2491Chr09:15069573..15069597 (25 bp)
AACAGTCGCGCGTTTGGGTCAAGGT
LOC_Os09g25139
Os.27861.1.S1_a_at--528--3771Chr09:15069770..15069794 (25 bp)
CTCTCTGCGCATTGCTTGTTGTATA
LOC_Os09g25139
Os.27861.1.S1_a_at--352--10131Chr09:15069938..15069962 (25 bp)
TATGATCCTGTGTGGTGCCTGCAAC
LOC_Os09g25139
Os.27861.1.S1_a_at--546--6631Chr09:15069967..15069991 (25 bp)
GTTGTGTGTCATTCAGCATTCCTAC
LOC_Os09g25139
Os.27861.1.S1_a_at--152--7831Chr09:15070028..15070052 (25 bp)
GGTAGACCATTAGTGGCCGCCAAAA
LOC_Os09g25139
Os.27861.1.S1_a_at--87--5531Chr09:15070121..15070145 (25 bp)
GAAAACGCGCGCCAGCAAAGCTAAG
LOC_Os09g25139
Os.27861.1.S1_a_at--69--951Chr09:15070155..15070179 (25 bp)
AGGAACTTGTTTCCATGCCTAGGAA
LOC_Os09g25139
Os.27861.1.S1_a_at--320--8131Chr09:15070221..15070245 (25 bp)
GGACATGTTACGTGCCTAGCTTAAA
LOC_Os09g25139
Os.27861.1.S1_a_at--601--5451Chr09:15070250..15070274 (25 bp)
GAACGACTGCTCATTTTCTCAAAAA
LOC_Os09g25139
Os.27861.1.S1_a_at--880--1391Chr09:15070287..15070311 (25 bp)
AGACTTCTGGTAGCTAGTGCCCTAA
LOC_Os09g25139
Target Sequence 
TCATTTGCAAAACGTCTCCATCTCAACTGAAACAACAGTCGCGCGTTTGGGTCAAGGTGACAGGTGTTCTATATCGTCAG
TAGCGATTGTATAGTGGCTGGAAGACAAAGAAAGCTCTCTGCGCATTGCTTGTTGTATATGTTAGGATTACGGAAAGGTG
CGACTGTAAGAGTGCTATGATCCTGTGTGGTGCCTGCAACTCATGTTGTGTGTCATTCAGCATTCCTACTTCTGCATCAA
TTGTTTTCAAGTTCAATTTTAGGATGGTAGACCATTAGTGGCCGCCAAAAGATATTAGCTACCTATCTGTATAATTTAAT
CTGAGATGTAAAATGGAAAAAAAATAATTAACCACATAGAAAACGCGCGCCAGCAAAGCTAAGTTTATTAGTAGGAACTT
GTTTCCATGCCTAGGAAAAAATGTGCACTGAACATTAAGCATCATATACAAAGAAAAGGGACATGTTACGTGCCTAGCTT
AAACTTAGAACGACTGCTCATTTTCTCAAAAATTGTTGTATTATAGACTTCTGGTAGCTAGTGCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27861.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis