Browse Element(s) Details


Os.56136.1.S1_at

Description gb:AK109320.1
DB_XREF= gi:32994529
TID=Os.56136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G12, full insert sequence.
FL= gb:AK109320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2520010/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed
LOC_Os09g25210NANA9+15100741..15101103hypothetical protein
LOC_Os09g25220OsAffx.6395.1.S1_at11/119+15110085..15111567IBR domain containing protein
LOC_Os09g25230Os.14491.2.S1_x_at2/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25230Os.47463.1.S1_x_at1/119+15112451..15113440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25240NANA9+15113632..15117605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25250NANA9+15118920..15122014transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56136.1.S1_at--839--2851Chr09:15094181..15094367 (25 bp)
AAGTGCAGGTGTGGATATTGCTTCT
LOC_Os09g25200
Os.56136.1.S1_at--131--7751NONE
GGTGTGGATATTGCTTCTGCTACGC
NONE
Os.56136.1.S1_at--637--8571Chr09:15094354..15094378 (25 bp)
TGGATATTGCTTCTGCTACGCTTGC
LOC_Os09g25200
Os.56136.1.S1_at--88--10231Chr09:15094358..15094382 (25 bp)
TATTGCTTCTGCTACGCTTGCGCAT
LOC_Os09g25200
Os.56136.1.S1_at--196--10711Chr09:15094375..15094399 (25 bp)
TTGCGCATCCCCAATGTCAAAGGAG
LOC_Os09g25200
Os.56136.1.S1_at--896--7071Chr09:15094390..15094414 (25 bp)
GTCAAAGGAGCTCCATTACTGCAAG
LOC_Os09g25200
Os.56136.1.S1_at--1025--10471Chr09:15094405..15094429 (25 bp)
TTACTGCAAGAGATGCAAGCGCTGA
LOC_Os09g25200
Os.56136.1.S1_at--717--1291Chr09:15094415..15094439 (25 bp)
AGATGCAAGCGCTGATATCGTTGGC
LOC_Os09g25200
Os.56136.1.S1_at--1029--4551Chr09:15094423..15094447 (25 bp)
GCGCTGATATCGTTGGCTAGGTTTT
LOC_Os09g25200
Os.56136.1.S1_at--195--4751Chr09:15094425..15094449 (25 bp)
GCTGATATCGTTGGCTAGGTTTTTT
LOC_Os09g25200
Os.56136.1.S1_at--529--10231Chr09:15094461..15094485 (25 bp)
TTTGATGAACGCATATATGAGTGAT
LOC_Os09g25200
Target Sequence 
AAGTGCAGGTGTGGATATTGCTTCTGCTACGCTTGCGCATCCCCAATGTCAAAGGAGCTCCATTACTGCAAGAGATGCAA
GCGCTGATATCGTTGGCTAGGTTTTTTTTTCGTTCAATTTGATGAACGCATATATGAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis