Browse Element(s) Details


OsAffx.19600.2.S1_s_at

Description tigr:9637.m02169
TID=OsAffx.19600.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2517011/11hypothetical protein
LOC_Os07g459206/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g036002/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25139Os.27861.1.S2_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25139Os.27861.1.S1_a_at11/119+15064800..15071061expressed protein
LOC_Os09g25150Os.9685.2.S1_at11/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25150Os.9685.1.S1_a_at10/119+15075245..15078325cinnamoyl CoA reductase, putative, expressed
LOC_Os09g25160NANA9+15084403..15085697transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25170OsAffx.19600.2.S1_s_at11/119+15086006..15087115hypothetical protein
LOC_Os09g25190Os.51952.1.S1_x_at11/119+15089662..15091887zinc finger family protein, putative, expressed
LOC_Os09g25200Os.56136.1.S1_at10/119+15093500..15094506IBR domain containing protein, expressed
LOC_Os09g25210NANA9+15100741..15101103hypothetical protein
LOC_Os09g25220OsAffx.6395.1.S1_at11/119+15110085..15111567IBR domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19600.2.S1_s_at--535--2513Chr12:5797442..5797465 (24 bp)
AACATTATGCAGACCACATCAAGGA
NONE
OsAffx.19600.2.S1_s_at--19--9714Chr12:5797801..5797825 (25 bp)
TCACAAGGCTGATGCTGAATATCTG
NONE
OsAffx.19600.2.S1_s_at--521--6332Chr12:5797811..5797835 (25 bp)
GATGCTGAATATCTGAACAAACCTA
NONE
OsAffx.19600.2.S1_s_at--464--232Chr12:5797862..5797886 (25 bp)
ATATTTGGCAATAGCTTGGCTACAG
NONE
OsAffx.19600.2.S1_s_at--760--3413Chr12:5797980..5798004 (25 bp)
CAGCAACTGGATCAGCTAGTAGAGT
NONE
OsAffx.19600.2.S1_s_at--67--1573Chr12:5797993..5798017 (25 bp)
AGCTAGTAGAGTTCATGCCCTTAAT
NONE
OsAffx.19600.2.S1_s_at--134--9574Chr12:5798036..5798060 (25 bp)
TCTTCAGCACCCAAACCCAAGAAAG
NONE
OsAffx.19600.2.S1_s_at--752--8333Chr12:5798091..5798115 (25 bp)
GGCTGATAGGCGCATTTAAATCTGT
NONE
OsAffx.19600.2.S1_s_at--597--892Chr12:5798098..5798122 (25 bp)
AGGCGCATTTAAATCTGTTGGTGAC
NONE
OsAffx.19600.2.S1_s_at--682--7353Chr12:5798118..5798142 (25 bp)
GTGACAAGCTTGCTGGAGCAATAGT
NONE
OsAffx.19600.2.S1_s_at--410--5113Chr12:5798252..5798276 (25 bp)
GCACATCTAGTTGACAATCCTCCAA
NONE
Target Sequence 
AACATTATGCAGACCACATCAAGGATCACAAGGCTGATGCTGAATATCTGAACAAACCTATTCACAATTATAGCAAAATG
CTTGTCATATTTGGCAATAGCTTGGCTACAGGGAAATATGCAAAAGGATCAGCAACTGGATCAGCTAGTAGAGTTCATGC
CCTTAATGAGGAGAATGGTGCATCATCTTCAGCACCCAAACCCAAGAAAGCAAAGACTGCTGCTGCAATTGAAGAGAAAG
GGCTGATAGGCGCATTTAAATCTGTTGGTGACAAGCTTGCTGGAGCAATAGTTGAAGCTGGAAAAGAGGCTGCAAAATCT
AATAATGAGCTGCCCGATAACCTGTATGAGAGTGTGCATAGCATTCTAGGGTTTGAAGATGCACATCTTACTCATTATCA
TGCACATCTAGTTGACAATCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19600.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis