Browse Element(s) Details


Os.13008.2.S1_x_at

Description gb:AK072722.1
DB_XREF= gi:32982745
TID=Os.13008.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13008 (NCBI UniGene Cluster)
UG_TITLE=Lipoxygenase (CM-LOX2) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138I11, full insert sequence.
FL= gb:AK072722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3985011/11lipoxygenase 8, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39840Os.4416.1.S1_at11/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.49363.2.S1_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.56910.1.S1_s_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_x_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.1.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.6901.1.S1_at1/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39860Os.17880.1.S1_a_at11/118+25117486..25121813Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os08g39870Os.7762.1.S1_at10/118+25127286..25134092Glycosyl hydrolase family 1 protein, expressed
LOC_Os08g39880Os.5805.1.S1_at11/118+25137215..25140785G-patch domain containing protein, expressed
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13008.2.S1_x_at--462--9711Chr08:25108650..25108674 (25 bp)
TCAAGGTCACCGTCGAAGGGCTTCT
LOC_Os08g39850
Os.13008.2.S1_x_at--944--5311Chr08:25108664..25108688 (25 bp)
GAAGGGCTTCTCAACAGCCTGAGGC
LOC_Os08g39850
Os.13008.2.S1_x_at--976--5291Chr08:25108693..25108717 (25 bp)
GAAGGCGATCGACAACATCAGGGAT
LOC_Os08g39850
Os.13008.2.S1_x_at--542--3471Chr08:25108711..25108735 (25 bp)
CAGGGATCTCATCGGAAGGTCGCTC
LOC_Os08g39850
Os.13008.2.S1_x_at--454--7111Chr08:25108748..25108769 (22 bp)
GTCAGCTCCGAGCTTGAAGCGAAGA
LOC_Os08g39850
Os.13008.2.S1_x_at--872--931Chr08:25112941..25112965 (25 bp)
AGGCAACGGTGCATAGCTACGCGCA
LOC_Os08g39850
Os.13008.2.S1_x_at--202--4851Chr08:25112956..25112980 (25 bp)
GCTACGCGCACAAGGTGGACGACGA
LOC_Os08g39850
Os.13008.2.S1_x_at--596--8591Chr08:25113052..25113076 (25 bp)
TGGTCACCAACGAGCTCGGGCAGGA
LOC_Os08g39850
Os.13008.2.S1_x_at--772--2851Chr08:25113168..25113192 (25 bp)
AAGTCCAGCATCGACGAGGGCACGC
LOC_Os08g39850
Os.13008.2.S1_x_at--386--9571Chr08:25113205..25113229 (25 bp)
TCTTCTTCGCCAAGGTATATAGTTA
LOC_Os08g39850
Os.13008.2.S1_x_at--672--1471Chr08:25113267..25113291 (25 bp)
AGAATATGTAGTCTAGCCAGCTAGT
LOC_Os08g39850
Target Sequence 
TCAAGGTCACCGTCGAAGGGCTTCTCAACAGCCTGAGGCCGTCGAAGGCGATCGACAACATCAGGGATCTCATCGGAAGG
TCGCTCTTCCTCGAGCTCGTCAGCTCCGAGCTTGAAGCGAAGACAGGGAAGAAGAAGGCAACGGTGCATAGCTACGCGCA
CAAGGTGGACGACGACGACCATGGCGTCGTCACCTACGAGGCCGACTTCGACGTGCCGACCGGCTTCGGCCCCATCGGCG
CCGTCGTGGTCACCAACGAGCTCGGGCAGGAGATGTTCCTCGAGGACCTCAACCTCACCGCCGGCGATGGCGCCGGCAAC
TCCACCGTCCTCCCCATCCGCTGCAACTCCTGGGTCCAGCCCAAGTCCAGCATCGACGAGGGCACGCCTGGCAAGCGCAT
CTTCTTCGCCAAGGTATATAGTTAAAATATCTTTTTTAAAAAAATTGTCTTCTTCTACAAAAGAATATGTAGTCTAGCCA
GCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13008.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis