Browse Element(s) Details


Os.13014.1.S1_a_at

Description gb:AF402802.1
DB_XREF= gi:15430726
TID=Os.13014.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13014 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone S14087 putative glutathione S-transferase OsGSTU15 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU15
FL= gb:AF402802.1 gb:AK067309.1 gb:AK104795.1 gb:AK104194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3814011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38100OsAffx.21993.2.S1_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38100OsAffx.21993.2.S1_x_at11/1110+20077727..20078317hypothetical protein
LOC_Os10g38110Os.10360.1.S1_at11/1110+20082346..20086498Cytochrome P450 family protein, expressed
LOC_Os10g38120NANA10+20097289..20100849Cytochrome P450 family protein
LOC_Os10g38130OsAffx.30710.1.S1_at11/1110+20101530..20102038hypothetical protein
LOC_Os10g38140Os.13014.1.S1_a_at11/1110+20102322..20103581Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38150Os.36568.1.S1_x_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38150Os.46637.1.S1_at11/1110+20104897..20105966glutathione S-transferase parC, putative, expressed
LOC_Os10g38160NANA10+20108236..20109794glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38170OsAffx.20181.1.S1_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38170OsAffx.20181.1.S1_x_at11/1110+20115593..20116075hypothetical protein
LOC_Os10g38189Os.49755.1.S1_at4/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed
LOC_Os10g38189Os.36568.1.S1_x_at1/1110+20119408..20120356glutathione S-transferase GST 34, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13014.1.S1_a_at--381--8971Chr10:20102892..20102916 (25 bp)
TGAAATGTCCACGACTCTACAGCGT
LOC_Os10g38140
Os.13014.1.S1_a_at--368--8311Chr10:20102807..20102831 (25 bp)
GGCTACCTGGATATCGCTCTGGGTT
LOC_Os10g38140
Os.13014.1.S1_a_at--943--2691Chr10:20102720..20102744 (25 bp)
AAGCTTCCGATCCTGGCTGTTTGGG
LOC_Os10g38140
Os.13014.1.S1_a_at--502--1791Chr10:20102627..20102651 (25 bp)
ACCGTTCAATATGGTTCTGTGCTGA
LOC_Os10g38140
Os.13014.1.S1_a_at--780--5231Chr10:20102604..20102628 (25 bp)
GAATACTGTGAATGTTCTTCCCAAG
LOC_Os10g38140
Os.13014.1.S1_a_at--108--631Chr10:20102568..20102592 (25 bp)
ATGCTGCTTTGTGCCTGACGATAAA
LOC_Os10g38140
Os.13014.1.S1_a_at--178--3171Chr10:20102545..20102569 (25 bp)
AATTGGTTTGAGTTCACCGTGCAAC
LOC_Os10g38140
Os.13014.1.S1_a_at--507--7331Chr10:20102520..20102544 (25 bp)
GTGCTTCGTGTTGCCATTTAGTATG
LOC_Os10g38140
Os.13014.1.S1_a_at--940--8771Chr10:20102459..20102483 (25 bp)
TGTTTCGTTTCTTCGGAACTGTAGT
LOC_Os10g38140
Os.13014.1.S1_a_at--65--10651Chr10:20102434..20102458 (25 bp)
TTCCCTTTCCGTCTGAGTCTGTAAT
LOC_Os10g38140
Os.13014.1.S1_a_at--228--10731Chr10:20102408..20102432 (25 bp)
TTGCTTGTAAGACTTCTCTCTGAGT
LOC_Os10g38140
Target Sequence 
TGAAATGTCCACGACTCTACAGCGTCTGGAGGAAGCATTTGTCAAGTGCAGCCAAGGGAAGGAATACTTCGGCGGCGACA
GCATCGGCTACCTGGATATCGCTCTGGGTTCGTTCCTCGGATGGATCAAGGCGGTGGAGAAGATCGCCGGCGTCGAGCTC
CTCAACGAAACCAAGCTTCCGATCCTGGCTGTTTGGGCGGATCGCTTCTGCGCGCACCCAGCCGTGGTGGACGTCGTGCC
TGACGCTGATAAATTGGTTGAGTTCACCGTTCAATATGGTTCTGTGCTGAATACTGTGAATGTTCTTCCCAAGTGATGGA
TGGTATGCTGCTTTGTGCCTGACGATAAATTGGTTTGAGTTCACCGTGCAACGTGCTTCGTGTTGCCATTTAGTATGGTC
ACTAGTGAAAGATGATGGTCATTTACGTTGTTTTGTTTCGTTTCTTCGGAACTGTAGTTTCCCTTTCCGTCTGAGTCTGT
AATTTTGCTTGTAAGACTTCTCTCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13014.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis