Browse Element(s) Details


Os.1316.1.S2_at

Description gb:AK105278.1
DB_XREF= gi:32990487
TID=Os.1316.1
CNT=136
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) oryzacystatin (P0003D09.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B06, full insert sequence.
FL= gb:AK105278.1 gb:AF435976.1 gb:AK121632.1 gb:AK072206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g047809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04760Os.27060.1.A1_at11/112+2174423..2178634Cycloartenol synthase, putative
LOC_Os02g04770OsAffx.2508.1.S1_at9/112+2180598..2182741hypothetical protein
LOC_Os02g04780Os.1316.1.S2_at9/112+2192210..2193799expressed protein
LOC_Os02g04790NANA2+2201294..2202337hypothetical protein
LOC_Os02g04800Os.48919.1.S1_at10/112+2205767..2207509avirulence-responsive protein, putative, expressed
LOC_Os02g04810OsAffx.2509.1.S1_at11/112+2208480..2214641B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1316.1.S2_at--382--6711Chr02:2193353..2193377 (25 bp)
GTTCGGGAGCAACCACCGTTACGCG
LOC_Os02g04780
Os.1316.1.S2_at--304--1771Chr02:2193394..2193418 (25 bp)
ACCTGCTCAACTACGAAGGGTGCGA
LOC_Os02g04780
Os.1316.1.S2_at--521--3211Chr02:2193401..2193425 (25 bp)
CAACTACGAAGGGTGCGAGTTCCTG
LOC_Os02g04780
Os.1316.1.S2_at--643--4391Chr02:2193525..2193549 (25 bp)
GCCAAGTGCTCGGACCTGGTGAAGA
LOC_Os02g04780
Os.1316.1.S2_at--202--9291Chr02:2193585..2193609 (25 bp)
TCCGGGAGTTGGGACTAGAGACAAT
LOC_Os02g04780
Os.1316.1.S2_at--584--10131Chr02:2193609..2193633 (25 bp)
TATGCACAAGTGATCAGCTCGACAG
LOC_Os02g04780
Os.1316.1.S2_at--1017--6431Chr02:2193620..2193644 (25 bp)
GATCAGCTCGACAGATAGTGTCAGT
LOC_Os02g04780
Os.1316.1.S2_at--721--3431Chr02:2193631..2193655 (25 bp)
CAGATAGTGTCAGTGTGCATAGAAT
LOC_Os02g04780
Os.1316.1.S2_at--504--3711Chr02:2193662..2193686 (25 bp)
CTAGTTTCAGTGTTCAGTGGGCTTT
LOC_Os02g04780
Os.1316.1.S2_at--1030--2931Chr02:2193806..2193830 (25 bp)
AAGGCTGTAACTATATTTATGTCAA
NONE
Os.1316.1.S2_at--525--5511Chr02:2193831..2193855 (25 bp)
GAACAAGATCAGTAGCAGCTTCTGA
NONE
Target Sequence 
GTTCGGGAGCAACCACCGTTACGCGCCGGCCGACCCGCCGGACCTGCTCAACTACGAAGGGTGCGAGTTCCTGCTGATCG
CCGCGTCCGACGACGTCGAGGAGGAGCTGGGGCTCGAGCTGGAGACCGAGACCGACGCCGAGGCCGACCTCGAAGGTGAT
GGCGCCGCCGCCGCCAAGTGCTCGGACCTGGTGAAGATGTTCGGCGAGGTCGCCGACGTGAAGCCGCTGCTGTCCGGGAG
TTGGGACTAGAGACAATATGCACAAGTGATCAGCTCGACAGATAGTGTCAGTGTGCATAGAATGTAGAACTAGTTTCAGT
GTTCAGTGGGCTTTTGGTGCAATTAGTAGACGAGTTTANGAGATGTTTAGAGTTCTAGTTTTAGNGCTGTACTAATCTTT
TGGCCGGNGAGTTTGGATGGTGATTTTGGAGAACAATCCGAAAATCCAAAAAAAAGGCTGTAACTATATTTATGTCAAGA
ACAAGATCAGTAGCAGCTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1316.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis