Browse Element(s) Details


Os.13253.1.S1_at

Description gb:AK073519.1
DB_XREF= gi:32983542
TID=Os.13253.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041M07, full insert sequence.
FL= gb:AK073519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5998011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed
LOC_Os01g60040Os.31272.1.S2_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.2.S1_x_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S1_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed
LOC_Os01g60040Os.31272.1.S2_a_at11/111+35032331..35049392microtubule bundling polypeptide TMBP200, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13253.1.S1_at--708--2471Chr01:35008468..35008492 (25 bp)
AACAGCAGGCTACTCAAGTTACGGA
LOC_Os01g59980
Os.13253.1.S1_at--355--4271Chr01:35008643..35008667 (25 bp)
CCTGACGAGGACTTCCCGGAGATAA
LOC_Os01g59980
Os.13253.1.S1_at--826--2851Chr01:35008679..35008703 (25 bp)
AAGGGCGTGAACAGGTTCGTCGTCA
LOC_Os01g59980
Os.13253.1.S1_at--741--6551Chr01:35008731..35008755 (25 bp)
GATTAACATCACCTCAGTACAGAAG
LOC_Os01g59980
Os.13253.1.S1_at--282--3271Chr01:35008750..35008774 (25 bp)
CAGAAGAAACCTGCCTATCGTAAGT
LOC_Os01g59980
Os.13253.1.S1_at--458--7511Chr01:35008813..35008837 (25 bp)
GTGGTTACGAAATTTCCAGTGCAAC
LOC_Os01g59980
Os.13253.1.S1_at--1057--2151Chr01:35008852..35008876 (25 bp)
ACACCAAGGGCATTCTTTACAGCAG
LOC_Os01g59980
Os.13253.1.S1_at--613--3411Chr01:35008893..35008917 (25 bp)
CAGCACAAGACGGTTCTCTGTATTG
LOC_Os01g59980
Os.13253.1.S1_at--338--10672Chr01:35008938..35008962 (25 bp)
TTCCATTTATTTTGTACTTCCAGGG
LOC_Os01g59980
Os.13253.1.S1_at--5--6491Chr01:35008988..35009012 (25 bp)
GATACTGAAACTCTGCATGACACTG
LOC_Os01g59980
Os.13253.1.S1_at--1121--8971Chr01:35009014..35009038 (25 bp)
TGAACTATTACTTTTCTGCGGCTTC
LOC_Os01g59980
Target Sequence 
AACAGCAGGCTACTCAAGTTACGGAGAAAGTGCGAATAGAGGATATACTGGAAAGAGCTTGGAAGGATCTGCAGTGAAGG
ATCCTGATCCATTGGATATGTCTGAGGAAGCTAAGGCCGAGAGATGGTTTANGAGGGCAGCACAGATAAAGGACATCTCC
GAGCTCGCCAACATCCCTGACGAGGACTTCCCGGAGATAATGCCGATGAGGAAGGGCGTGAACAGGTTCGTCGTCAGCAA
GAGGAAGACACCACTGGAGAGGAGATTAACATCACCTCAGTACAGAAGAAACCTGCCTATCGTAAGTTNTGAACCGAACG
AAGACGCTAACTAAAAAAAAAAGGTGTGGTTACGAAATTTCCAGTGCAACNGCGAGGAGTTAAAACACCAAGGGCATTCT
TTACAGCAGTTTTGTGATAATAAGCCAGCACAAGACGGTTCTCTGTATTGTAAAATTTTTGTTCTGAACCTTCCATTTAT
TTTGTACTTCCAGGGAATCCATGTTGTATATGAAACCTTCGATACTGAAACTCTGCATGACACTGTTGAACTATTACTTT
TCTGCGGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis