Browse Element(s) Details


Os.13461.1.S1_at

Description gb:AK102431.1
DB_XREF= gi:32987640
TID=Os.13461.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full insert sequence.
FL= gb:AK059659.1 gb:AK102431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4302011/11stress-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42980NANA2+25866512..25866909transposon protein, putative, unclassified
LOC_Os02g42990OsAffx.24695.1.S1_at11/112+25873125..25873697Auxin responsive protein, expressed
LOC_Os02g43000OsAffx.12467.1.S1_at10/112+25879153..25880901receptor-like protein kinase, putative, expressed
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13461.1.S1_at--1052--5171Chr02:25893058..25893082 (25 bp)
GCAATGGAAACTTACCAGGCCGGTT
LOC_Os02g43020
Os.13461.1.S1_at--1029--5251Chr02:25893511..25893530 (20 bp)
GAATCCCATCATGCGACAGGTACTG
LOC_Os02g43020
Os.13461.1.S1_at--903--5431Chr02:25893653..25893677 (25 bp)
GAACCCTAGGGCTTCTCAGGAGCAT
LOC_Os02g43020
Os.13461.1.S1_at--108--5931Chr02:25893672..25893696 (25 bp)
GAGCATCTTAAGAACCCTGGAGTGA
LOC_Os02g43020
Os.13461.1.S1_at--480--1451Chr02:25893759..25893783 (25 bp)
AGAAGCGCTGTTCGTGTCTATGTTC
LOC_Os02g43020
Os.13461.1.S1_at--395--7151Chr02:25893774..25893798 (25 bp)
GTCTATGTTCATTGCTCCTTACTTT
LOC_Os02g43020
Os.13461.1.S1_at--1058--10671Chr02:25893801..25893825 (25 bp)
TTCCATGCTCAGTCTTTGTGGACTT
LOC_Os02g43020
Os.13461.1.S1_at--222--7591Chr02:25893843..25893867 (25 bp)
GGGCTAATCTTCATTCTCAATTGGA
LOC_Os02g43020
Os.13461.1.S1_at--483--6111Chr02:25893874..25893898 (25 bp)
GAGTGCAGCGTGTCACTGGATTATT
LOC_Os02g43020
Os.13461.1.S1_at--960--10071Chr02:25893898..25893922 (25 bp)
TAGTGGTTATGGCATCCGTGCTACA
LOC_Os02g43020
Os.13461.1.S1_at--955--9231Chr02:25893957..25893981 (25 bp)
TCCTAAACATTTTCCCTACCGAATG
LOC_Os02g43020
Target Sequence 
GCAATGGAAACTTACCAGGCCGGTTTGAAGCATGATCCGAATAACCCGGAACTGCTGGACGGTGTGAAAAGGTGTATCGA
ACAGATCAACAAGGCCAACAGGGGTGATTTGACTCAGGAAGAGATTCAGGAACGACAGAACAAGGCTATGCAGGATCCAG
AGATCCAGAATATTCTTACAGAATCCCATCATGCGACAGGTACTGGTCGATTTGCAGGAGAACCCTAGGGCTTCTCAGGA
GCATCTTAAGAACCCTGGAGTGATGCAGAAGATTCAGAAGCTTGTAAGCGCTGGAATAGTTCAAATGAGATAGTCGACCA
AAGCAAGAAGCGCTGTTCGTGTCTATGTTCATTGCTCCTTACTTTTTTTCCATGCTCAGTCTTTGTGGACTTAAGATTTA
CACAGTTTGGGGCTAATCTTCATTCTCAATTGGATTATGTGAGTGCAGCGTGTCACTGGATTATTAGTGGTTATGGCATC
CGTGCTACAGCTGCACGNGCAAACGTATGTCTCTATTTGTTAGTCCTAAACATTTTCCCTACCGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis