Browse Element(s) Details


Os.13515.1.S1_at

Description gb:AK073521.1
DB_XREF= gi:32983544
TID=Os.13515.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045I15, full insert sequence.
FL= gb:AK073521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4079011/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13515.1.S1_at--308--7691Chr05:23838313..23838337 (25 bp)
GGGTTTACCACAAAGAGCTGCGTCA
LOC_Os05g40790
Os.13515.1.S1_at--373--9831Chr05:23838344..23838368 (25 bp)
TAAAAGAGCTCCTAATACGACCCCT
LOC_Os05g40790
Os.13515.1.S1_at--414--4191Chr05:23838365..23838389 (25 bp)
CCCTCTCGTCAAAACTACAACTTAT
LOC_Os05g40790
Os.13515.1.S1_at--810--4871Chr05:23838403..23838427 (25 bp)
GCTATCTTTTTGATGCCAACATTTG
LOC_Os05g40790
Os.13515.1.S1_at--672--251Chr05:23838551..23838575 (25 bp)
ATATCGAGAAGATACCTGCCCTTCC
LOC_Os05g40790
Os.13515.1.S1_at--1115--2651Chr05:23838752..23838775 (24 bp)
AAGCCATTGCAGTAGGTTCTCCGTG
LOC_Os05g40790
Os.13515.1.S1_at--1157--3951Chr05:23839001..23839025 (25 bp)
CGGTTCATAATTCGTTGGCTGCAAT
LOC_Os05g40790
Os.13515.1.S1_at--602--8331Chr05:23839017..23839041 (25 bp)
GGCTGCAATCAGTTAAACCCATTTT
LOC_Os05g40790
Os.13515.1.S1_at--1127--6871Chr05:23839132..23839156 (25 bp)
GTACCGTACCAGATATGTCGTTTAA
LOC_Os05g40790
Os.13515.1.S1_at--1106--8691Chr05:23839147..23839171 (25 bp)
TGTCGTTTAAACTTATCAGGCACCG
LOC_Os05g40790
Os.13515.1.S1_at--1056--9591Chr05:23839162..23839186 (25 bp)
TCAGGCACCGACATTTTGGATCTTG
LOC_Os05g40790
Target Sequence 
GGGTTTACCACAAAGAGCTGCGTCAGTGGGTTAAAAGAGCTCCTAATACGACCCCTCTCGTCAAAACTACAACTTATGAA
CAAGGNCTNTGCTATCTTTTTGATGCCAACATTTGGGATGCANTNCCTAAGGACANNTTTATTCTCCGTTATGANGATAT
CGAGAAGATACCTGCCCTTCCTCCCCTTNTTCCTGCCACCCAAAATCCTGCCNCCCAAAATGGTAGTGTAAGAATAAACA
AGCCATTGCAGTAGGTTCTCCGTGTTGAAGATTAGAGTTTCATGGCTTGGATCAATTGTTGGTATTATTAAGGGTATGCA
TGCTGGTTCTGGGGATNGGAGCTCCTGCGATGGCCGGCGTTTGTGGTANCTGCGAAATACCNCGGTTCATAATTCGTTGG
CTGCAATCAGTTAAACCCATTTTTAAGTTTTGAAACAAAGTTGAACCCCGTTTTAATTATGTTTCGGTCTTGTGATGACT
GAATGTTTTGAATGTTTAAACCTGTTTTTACCTGTACCGTACCAGATATGTCGTTTAAACTTATCAGGCACCGACATTTT
GGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis