Browse Element(s) Details


Os.13546.1.S1_at

Description gb:AK120417.1
DB_XREF= gi:37990040
TID=Os.13546.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093C14, full insert sequence.
FL= gb:AK120417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1405911/1160S ribosomal protein L11-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein
LOC_Os02g14030OsAffx.24240.1.S1_at11/112+7658701..7659433hypothetical protein
LOC_Os02g14040OsAffx.2606.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.1436.1.S1_x_at2/112+7671940..7672764hypothetical protein
LOC_Os02g14040OsAffx.8939.1.S1_x_at1/112+7671940..7672764hypothetical protein
LOC_Os02g14059Os.13546.1.S1_at11/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14059Os.28346.3.S1_x_at1/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14080NANA2+7689510..7689752hypothetical protein
LOC_Os02g14090OsAffx.11451.6.S1_s_at11/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14090OsAffx.11451.4.S1_x_at1/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007049biological_processcell cycle
GO:0010102biological_processlateral root morphogenesis
GO:0005842cellular_componentcytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13546.1.S1_at--857--9631Chr02:7677487..7677511 (25 bp)
TCAGTGACACCGGATGCTTCGGCTT
LOC_Os02g14059
Os.13546.1.S1_at--1107--4071Chr02:7686989..7687013 (25 bp)
CGACCCCTCAACAGGTATCTATGGA
LOC_Os02g14059
Os.13546.1.S1_at--997--4531Chr02:7687056..7687080 (25 bp)
GCCCGTCGTCGGAGGTGCAAGTCTC
LOC_Os02g14059
Os.13546.1.S1_at--421--4551Chr02:7687164..7687188 (25 bp)
GCCCAGGCGAATACCTCTTAAAACA
LOC_Os02g14059
Os.13546.1.S1_at--1161--9271Chr02:7687277..7687301 (25 bp)
TCCGGCCAGATGTTTTTGTCAATTA
LOC_Os02g14059
Os.13546.1.S1_at--1038--7071Chr02:7687294..7687318 (25 bp)
GTCAATTACCTGAAAGCTAAGAGCA
LOC_Os02g14059
Os.13546.1.S1_at--212--8851Chr02:7687324..7687348 (25 bp)
TGATCTTACATCATCTTGTCCAATG
LOC_Os02g14059
Os.13546.1.S1_at--191--9591Chr02:7687337..7687361 (25 bp)
TCTTGTCCAATGTCACACTTGTGCT
LOC_Os02g14059
Os.13546.1.S1_at--307--8151Chr02:7687369..7687393 (25 bp)
GGAAACATGTAGCTACCTCTGAATC
LOC_Os02g14059
Os.13546.1.S1_at--767--5251Chr02:7687389..7687413 (25 bp)
GAATCTGATCACCTACTTACAATTG
LOC_Os02g14059
Os.13546.1.S1_at--494--9691Chr02:7687475..7687499 (25 bp)
TCAAATACTACCATTCTTTTTCCCT
LOC_Os02g14059
Target Sequence 
TCAGTGACACCGGATGCTTCGGCTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTACGACCCCTCAACAGGTATC
TATGGAATGGACTTCTATGTTGTGCTTGAGCGTGCTGGCTACCGTGTTGCCCGTCGTCGGAGGTGCAAGTCTCGCGTTGG
GATCCAGCACCGGGTGACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTATGAAGGAGTCATCCTCAACAAGGCCC
AGGCGAATACCTCTTAAAACATTTTCACCTGTAGGCTCAGCTGTTAGAAAAGCTTTTCCCTTGTTGGGCAGAAGTTCACC
TTCCAAGTTTTATGTTACTTGATGAATTTTCCGGCCAGATGTTTTTGTCAATTACCTGAAAGCTAAGAGCATGATCTGAT
CTTACATCATCTTGTCCAATGTCACACTTGTGCTTTTGCATGGAAACATGTAGCTACCTCTGAATCTGATCACCTACTTA
CAATTGCAAGTTCAGGAAGGTAGTCCCNTTCTAGATTAGATATTTTCAAGAGATTGGCGTTTTTTTTTTCAAATACTACC
ATTCTTTTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis