Browse Element(s) Details


Os.13551.1.S1_at

Description gb:AK101411.1
DB_XREF= gi:32986620
TID=Os.13551.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full insert sequence.
FL= gb:AK101411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1804411/11GMFP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17990OsAffx.29260.1.S1_at1/118+11019160..11025246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g18000Os.47763.1.A1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000OsAffx.5863.1.S1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.47763.1.A1_s_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.27037.1.A1_at1/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18030OsAffx.29259.1.S1_at10/118+11045555..11048391hypothetical protein
LOC_Os08g18044Os.13551.1.S1_at11/118+11049105..11056097GMFP4, putative, expressed
LOC_Os08g18060OsAffx.29260.1.S1_at11/118+11058119..11059756expressed protein
LOC_Os08g18070NANA8+11061548..11063635hypothetical protein
LOC_Os08g18080OsAffx.25854.1.S1_at6/118+11071466..11080429hypothetical protein
LOC_Os08g18080OsAffx.27864.4.S1_x_at1/118+11071466..11080429hypothetical protein
LOC_Os08g18080Os.50472.1.S1_at1/118+11071466..11080429hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13551.1.S1_at--1048--8611Chr08:11049677..11049701 (25 bp)
TGGTGTTCCTGTTGCAACCCTTGAG
LOC_Os08g18044
Os.13551.1.S1_at--448--2191Chr08:11049514..11049538 (25 bp)
ACAAGCCAGTTCACCTATAATCCGT
LOC_Os08g18044
Os.13551.1.S1_at--1034--7771Chr08:11049463..11049487 (25 bp)
GGTGCCCCTCCAGCTGAAGAAAGGA
LOC_Os08g18044
Os.13551.1.S1_at--647--8171Chr08:11049441..11049465 (25 bp)
GGAACCGCTGTGTTATACTGTGAAA
LOC_Os08g18044
Os.13551.1.S1_at--579--2211Chr08:11049417..11049441 (25 bp)
AAATTACTCCATGACGTACTCCGGT
LOC_Os08g18044
Os.13551.1.S1_at--992--1071Chr08:11049315..11049339 (25 bp)
AGGGCTATTGCATTGTCGTTTTGAC
LOC_Os08g18044
Os.13551.1.S1_at--966--6711Chr08:11049280..11049304 (25 bp)
GTTCTCTGAATGTTCTATGCACCGG
LOC_Os08g18044
Os.13551.1.S1_at--638--10131Chr08:11049265..11049289 (25 bp)
TATGCACCGGTAAATCTTCTCATGT
LOC_Os08g18044
Os.13551.1.S1_at--1054--1251Chr08:11049225..11049249 (25 bp)
AGATACGCCATTTTATTTGCCTGTT
LOC_Os08g18044
Os.13551.1.S1_at--1088--6871Chr08:11049183..11049207 (25 bp)
GTATTTTTCTCTCGACTAGCTTTCA
LOC_Os08g18044
Os.13551.1.S1_at--1070--3151Chr08:11049153..11049177 (25 bp)
AATTCCTCATTGTACAGCCGTTGTA
LOC_Os08g18044
Target Sequence 
TGGTGTTCCTGTTGCAACCCTTGAGCAACGCGCTAGCAGAAACGATGCATGGAGCCAGAGGATGCGTGAGAAGTATGGTC
TGGACACAAGCCAGTTCACCTATAATCCGTCAGACCCAAGCAGATATCAGCAAAATGGTGCCCCTCCAGCTGAAGAAAGG
AACCGCTGTGTTATACTGTGAAAAATTACTCCATGACGTACTCCGGTATGGTGTTTTTTTCATGGGCAGGCTTGTGCAGT
TGGTTGCACCGAGTAATTAATTATTCAGAGTGTCGTGTGTAAAGAGGGCTATTGCATTGTCGTTTTGACATATTGATGTG
TTCTCTGAATGTTCTATGCACCGGTAAATCTTCTCATGTGGAGAAGCTGCTATTAGATACGCCATTTTATTTGCCTGTTT
TTGGGTGTATCTTTTNGTATTTTTCTCTCGACTAGCTTTCATCCTCAATTCCTCATTGTACAGCCGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis