Browse Element(s) Details


Os.136.1.S1_a_at

Description gb:D78609.1
DB_XREF= gi:1122224
TID=Os.136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.136 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for bZIP protein, complete cds.
PROD=bZIP protein
FL= gb:D78609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5825011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.136.1.S1_a_at--255--931Chr03:33126927..33126951 (25 bp)
AGGCATGAACGCGTTGTTTCCCGCC
LOC_Os03g58250
Os.136.1.S1_a_at--817--10591Chr03:33126900..33126924 (25 bp)
TTCTGATATGTCATCCCTCAGCATG
LOC_Os03g58250
Os.136.1.S1_a_at--752--6251Chr03:33126821..33126845 (25 bp)
GATGACCCGAACAATTACTTCGCTA
LOC_Os03g58250
Os.136.1.S1_a_at--1149--7031Chr03:33126778..33126802 (25 bp)
GTAACAACAACTACATGCCCGACAT
LOC_Os03g58250
Os.136.1.S1_a_at--955--2071Chr03:33126757..33126781 (25 bp)
ACATACCTTCTTCGGCTCAGGAGGA
LOC_Os03g58250
Os.136.1.S1_a_at--9--8631Chr03:33126615..33126639 (25 bp)
TGGGTCGACGTCCTGAGACCGAAAC
LOC_Os03g58250
Os.136.1.S1_a_at--415--4771Chr03:33126585..33126609 (25 bp)
GCTGCTTCGGTTCTGAAAGACACTG
LOC_Os03g58250
Os.136.1.S1_a_at--690--4011Chr03:33126488..33126512 (25 bp)
CGTCGTCATTGTGCATTCTTTGTAA
LOC_Os03g58250
Os.136.1.S1_a_at--250--8731Chr03:33126468..33126492 (25 bp)
TGTAAGGGACACCTCTTAGTACCCT
LOC_Os03g58250
Os.136.1.S1_a_at--19--9771Chr03:33126452..33126476 (25 bp)
TAGTACCCTCTTCTTCTAAGGGACT
LOC_Os03g58250
Os.136.1.S1_a_at--328--5691Chr03:33126431..33126455 (25 bp)
GACTTAGTACCCCTTGTGGATCTCA
LOC_Os03g58250
Target Sequence 
AGGCATGAACGCGTTGTTTCCCGCCGCTTCTGATATGTCATCCCTCAGCATGCCATTCAACAGCTCCCCATCTGAAGCAA
CGTCAGACGCTGCTGTTCCCATCCAAGATGACCCGAACAATTACTTCGCTACTAACAACGACATCGGAGGTAACAACAAC
TACATGCCCGACATACCTTCTTCGGCTCAGGAGGACGAGGACTTCGTCAATGGCGCTCTGGCTGCCGGCAAGATTGGCCG
GACAGCCTCGCTGCAGCGGGTGGCGAGCCTGGAGCATCTCCAGAAGAGGATGTGCGGTGGGCCGGCTTCGTCTGGGTCGA
CGTCCTGAGACCGAAACCCAGAGCTGCTTCGGTTCTGAAAGACACTGCGAGCAGGAAATGATGATTGGACAGGCGTAGAC
ATTGCTAATGCTGTGAGGTTGATGATTGTTGGTCGTCGTCGTCGTCATTGTGCATTCTTTGTAAGGGACACCTCTTAGTA
CCCTCTTCTTCTAAGGGACTTAGTACCCCTTGTGGATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.136.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis