Browse Element(s) Details


Os.13615.4.S1_at

Description gb:NM_192490.1
DB_XREF= gi:34912063
GEN=P0445H04.34
TID=Os.13615.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.34 (P0445H04.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445H04.34 (P0445H04.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g472621/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47220NANA1+27311754..27313103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47230NANA1+27313704..27315510retrotransposon protein, putative, unclassified
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified
LOC_Os01g47256Os.13615.2.S1_at11/111+27331109..27334886Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13615.4.S1_at--19--4151Chr01:27335634..27335658 (25 bp)
CGCGGATTCGGGTTCGCGTCCTTTG
NONE
Os.13615.4.S1_at--705--4671Chr01:27335635..27335659 (25 bp)
GCGGATTCGGGTTCGCGTCCTTTGC
NONE
Os.13615.4.S1_at--123--3971Chr01:27335636..27335660 (25 bp)
CGGATTCGGGTTCGCGTCCTTTGCG
NONE
Os.13615.4.S1_at--213--111Chr01:27335639..27335663 (25 bp)
ATTCGGGTTCGCGTCCTTTGCGCTT
NONE
Os.13615.4.S1_at--1026--10571Chr01:27335640..27335664 (25 bp)
TTCGGGTTCGCGTCCTTTGCGCTTG
NONE
Os.13615.4.S1_at--586--9431Chr01:27335641..27335665 (25 bp)
TCGGGTTCGCGTCCTTTGCGCTTGC
NONE
Os.13615.4.S1_at--418--10691Chr01:27335656..27335755 (25 bp)
TTGCGCTTGCGCGAACTCCAGTGAG
LOC_Os01g47262
Os.13615.4.S1_at--219--9291NONE
TCCGGATTTCTCAAGTGCTAAATGG
NONE
Os.13615.4.S1_at--3--4271NONE
CCGGATTTCTCAAGTGCTAAATGGC
NONE
Os.13615.4.S1_at--74--3971NONE
CGGATTTCTCAAGTGCTAAATGGCA
NONE
Os.13615.4.S1_at--753--7931NONE
GGATTTCTCAAGTGCTAAATGGCAG
NONE
Target Sequence 
CGCGGATTCGGGTTCGCGTCCTTTGCGCTTGCGCGAACTCCAGTGAGGTTGTCCAGCTGCTGTTCCGGATTTCTCAAGTG
CTAAATGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13615.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis