Browse Element(s) Details


Os.13624.1.S1_at

Description gb:AK065822.1
DB_XREF= gi:32975840
TID=Os.13624.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0697C12.13 (P0697C12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042A04, full insert sequence.
FL= gb:AK065822.1 gb:AK061615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3851011/11Sec61beta family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38440Os.43764.1.A1_at3/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.7.S1_x_at2/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.3.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38440OsAffx.24046.2.S1_x_at1/111+21932480..21934698hAT family dimerisation domain containing protein
LOC_Os01g38450OsAffx.11375.1.S1_at11/111+21936569..21937894hypothetical protein
LOC_Os01g38460NANA1+21942208..21944427retrotransposon protein, putative, unclassified
LOC_Os01g38480Os.15942.2.S1_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.2.S1_a_at11/111+21950422..21953614expressed protein
LOC_Os01g38480Os.15942.3.S1_x_at10/111+21950422..21953614expressed protein
LOC_Os01g38490NANA1+21954056..21954812expressed protein
LOC_Os01g38500Os.40827.1.S1_at10/111+21955563..21957624expressed protein
LOC_Os01g38510Os.13624.1.S1_at11/111+21958028..21959974Sec61beta family protein, expressed
LOC_Os01g38520Os.31326.1.S1_at11/111+21960819..21962301expressed protein
LOC_Os01g38530Os.38249.2.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38530Os.38249.1.S1_at11/111+21963886..21969952early flowering 3, putative, expressed
LOC_Os01g38540NANA1+21971994..21978146transposon protein, putative, unclassified
LOC_Os01g38550NANA1+21978762..21981985transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13624.1.S1_at--221--4111Chr01:21959408..21959432 (25 bp)
CGAACTCAGTCCTCATCATGAGCAT
LOC_Os01g38510
Os.13624.1.S1_at--936--3511Chr01:21959424..21959448 (25 bp)
CATGAGCATTGGGTTCATTGCCGTC
LOC_Os01g38510
Os.13624.1.S1_at--1088--10091Chr01:21959494..21959518 (25 bp)
TAGGCTGTCATTATCATACCCGCAT
LOC_Os01g38510
Os.13624.1.S1_at--117--9971Chr01:21959510..21959534 (25 bp)
TACCCGCATGCGAAATTTGTCAACA
LOC_Os01g38510
Os.13624.1.S1_at--1106--1311Chr01:21959534..21959558 (25 bp)
AGAGGAACCCGTAGCCTAATGGAAT
LOC_Os01g38510
Os.13624.1.S1_at--235--9871Chr01:21959633..21959657 (25 bp)
TACTAACCTGTTGTGGTTCTGTCCT
LOC_Os01g38510
Os.13624.1.S1_at--1128--8571Chr01:21959646..21959670 (25 bp)
TGGTTCTGTCCTTACAAGTCGTTTT
LOC_Os01g38510
Os.13624.1.S1_at--504--2851Chr01:21959661..21959685 (25 bp)
AAGTCGTTTTTGGTCATTGCTAATA
LOC_Os01g38510
Os.13624.1.S1_at--421--1131Chr01:21959742..21959766 (25 bp)
AGTCCTTTTCTTACCTGTGGCCATC
LOC_Os01g38510
Os.13624.1.S1_at--494--451Chr01:21959764..21959788 (25 bp)
ATCTCCCCTTATCTCTGAAGTTGGG
LOC_Os01g38510
Os.13624.1.S1_at--559--7971Chr01:21959825..21959849 (25 bp)
GGATCTGAAGCCCAACACTACAATG
LOC_Os01g38510
Target Sequence 
CGAACTCAGTCCTCATCATGAGCATTGGGTTCATTGCCGTCGTTGCTNNCTTCTGCATGTTTTCGGNNNNNNNNNNNTNN
CNCNACCNTCCNCCTAGGCTGTCATTATCATACCCGCATGCGAAATTTGTCAACAGAGGAACCCGTAGCCTAATGGAATA
GCAAATGACTATCAGAGTATGAAAAATTTTGCTGTTACCATCATACCATGGAATCTTATATAGTACCTTACAATACTAAC
CTGTTGTGGTTCTGTCCTTACAAGTCGTTTTTGGTCATTGCTAATAGTTAAGTCTTATGTTAGTTTCTGTAGTTCTGTCA
TATTTCTGCTCTTATCTTTNTCAGTCCTTTTCTTACCTGTGGCCATCTCCCCTTATCTCTGAAGTTGGGGCACTTGATCC
TTTTGTTTATATCTCTATATGTTNNGGATCTGAAGCCCAACACTACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis