Browse Element(s) Details


Os.13625.1.S1_at

Description gb:AK061648.1
DB_XREF= gi:32971666
TID=Os.13625.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094F01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B12, full insert sequence.
FL= gb:AK098876.1 gb:AK061648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5834010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58320NANA3+33165663..33167330Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58330Os.27522.1.S1_x_at11/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58330Os.27522.2.S1_at9/113+33172040..33176377Lipoamide dehydrogenase, putative, expressed
LOC_Os03g58340Os.13625.1.S1_at10/113+33179257..33183312expressed protein
LOC_Os03g58350Os.26512.1.S1_at11/113+33184945..33186252AUX/IAA family protein, expressed
LOC_Os03g58364NANA3+33191354..33192260hypothetical protein
LOC_Os03g58380Os.23341.1.S1_at11/113+33198209..33199182aldehyde oxidase, putative, expressed
LOC_Os03g58390Os.49418.1.S1_at11/113+33206126..33211185Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13625.1.S1_at--474--2331NONE
AAAGAACCAGCTTCCAGTGCTTCAG
NONE
Os.13625.1.S1_at--584--5071Chr03:33182150..33182174 (25 bp)
GCAGCGTCTGGCATGTCAAGCGATG
LOC_Os03g58340
Os.13625.1.S1_at--476--3371Chr03:33182323..33182347 (25 bp)
CACCTCGTTCATTAGCACCAAATAG
LOC_Os03g58340
Os.13625.1.S1_at--152--2411Chr03:33182364..33182388 (25 bp)
AAACACGTGTTATCCAGCTCAAGCA
LOC_Os03g58340
Os.13625.1.S1_at--76--10611Chr03:33182477..33182501 (25 bp)
TTCTGATGCTCATAAACCACGTCGC
LOC_Os03g58340
Os.13625.1.S1_at--79--2691Chr03:33183098..33183122 (25 bp)
AAGCTGATTTTATTCCCGCACCAAA
LOC_Os03g58340
Os.13625.1.S1_at--333--2971Chr03:33183153..33183177 (25 bp)
AATGGAGACAACATGTGTGCCCTGA
LOC_Os03g58340
Os.13625.1.S1_at--540--8691Chr03:33183168..33183192 (25 bp)
TGTGCCCTGAGGAAGTTGCTGATTT
LOC_Os03g58340
Os.13625.1.S1_at--256--4571Chr03:33183196..33183220 (25 bp)
GCGCCCTCTCTCGATGTAAAATGAA
LOC_Os03g58340
Os.13625.1.S1_at--395--7051Chr03:33183211..33183235 (25 bp)
GTAAAATGAATCTCCTATCGCTCTT
LOC_Os03g58340
Os.13625.1.S1_at--1158--4811Chr03:33183230..33183254 (25 bp)
GCTCTTCACTCAATCACTCATTTGT
LOC_Os03g58340
Target Sequence 
AAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCAGCGTCAGAGAGATGC
TCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCAGCTCAA
GCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAAC
CTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTG
GAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGACAAC
ATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATC
ACTCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis