Browse Element(s) Details


Os.13740.1.A1_at

Description gb:AK101398.1
DB_XREF= gi:32986607
TID=Os.13740.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.13740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037C08, full insert sequence.
FL= gb:AK101398.1 gb:AK060226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38470OsAffx.4014.1.S1_at11/114+22646912..22647586hypothetical protein
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13740.1.A1_at--261--4431Chr04:22673142..22673166 (25 bp)
GCCAGGCCTTTTCAGCGGCATAGTG
LOC_Os04g38520
Os.13740.1.A1_at--194--1631Chr04:22673155..22673179 (25 bp)
AGCGGCATAGTGACCGTCGCTGCCA
LOC_Os04g38520
Os.13740.1.A1_at--784--7231Chr04:22673170..22673194 (25 bp)
GTCGCTGCCACGAGCAGCATGACGA
LOC_Os04g38520
Os.13740.1.A1_at--10--5451Chr04:22673193..22673217 (25 bp)
GAACGAGTACTCGTCGTCGGGCATC
LOC_Os04g38520
Os.13740.1.A1_at--173--5871Chr04:22673250..22673274 (25 bp)
GAGCCAGGCGATGATGATACCTCCC
LOC_Os04g38520
Os.13740.1.A1_at--949--691Chr04:22673263..22673287 (25 bp)
ATGATACCTCCCCAGGTGCTGGTGC
LOC_Os04g38520
Os.13740.1.A1_at--314--8611Chr04:22673282..22673306 (25 bp)
TGGTGCCTCGCTCTATGATGCCCTC
LOC_Os04g38520
Os.13740.1.A1_at--1084--7191Chr04:22673310..22673334 (25 bp)
GTCGTCCGAACCTACCGTGCATGGG
LOC_Os04g38520
Os.13740.1.A1_at--1085--9571Chr04:22673387..22673411 (25 bp)
TCTTGTCACTCCTCGGTGGCAGCTT
LOC_Os04g38520
Os.13740.1.A1_at--429--7531Chr04:22673402..22673426 (25 bp)
GTGGCAGCTTCAGGAACGCCGACAT
LOC_Os04g38520
Os.13740.1.A1_at--483--7251Chr04:22673551..22673575 (25 bp)
GTCCGTGGTTGCTTTAGTCCAGTCA
LOC_Os04g38520
Target Sequence 
GCCAGGCCTTTTCAGCGGCATAGTGACCGTCGCTGCCACGAGCAGCATGACGAACGAGTACTCGTCGTCGGGCATCAGCA
CCGCGTCGGACTGCGACGGCACGGTGAGGAGCCAGGCGATGATGATACCTCCCCAGGTGCTGGTGCCTCGCTCTATGATG
CCCTCATCGTCGTCCGAACCTACCGTGCATGGGGGCAGAGAGGGAGGCTGTGCCGTTCCGGAGGGAAGGGTGCACGGTGG
CGGCCTCTTGTCACTCCTCGGTGGCAGCTTCAGGAACGCCGACATGGATAAGCTCTGAATTTGCTTCTCCGGCTGCCGAA
TTCTGTTAGTTTGGTTGTGTACATAAACAAGGCAATTTATTTTGCCGATTTGAACTTCTTTGGCTTTTTTTCCTTTGTCT
AGATAAATGGTCCGTGGTTGCTTTAGTCCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13740.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis