Browse Element(s) Details


Os.13862.1.S1_at

Description gb:AK070747.1
DB_XREF= gi:32980770
TID=Os.13862.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066C10, full insert sequence.
FL= gb:AK070747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3046610/11RNase Z, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478Os.17123.1.S1_at11/119+18575971..18580276expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0042781molecular_function3'-tRNA processing endoribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13862.1.S1_at--886--5331Chr09:18566409..18566433 (25 bp)
GAAGTTGCCTTTACAGGTGACACAA
LOC_Os09g30466
Os.13862.1.S1_at--778--10751Chr09:18566369..18566393 (25 bp)
TTGACCCACGAAATGCAGATGCCCT
LOC_Os09g30466
Os.13862.1.S1_at--1126--6331Chr09:18566352..18566376 (25 bp)
GATGCCCTGAGAGCAAAAGTCCTTA
LOC_Os09g30466
Os.13862.1.S1_at--470--8231Chr09:18565682..18565706 (25 bp)
GGCAACCTTCCTAGATGACCAAATT
LOC_Os09g30466
Os.13862.1.S1_at--878--10751Chr09:18565659..18565683 (25 bp)
TTGATGTTGATCATGCTCGGGAGCA
LOC_Os09g30466
Os.13862.1.S1_at--68--8451NONE
GGCCACATGCATCTCTCTGAGATAA
NONE
Os.13862.1.S1_at--1082--831Chr09:18565473..18565497 (25 bp)
ATGGAGCACTCCCAATGGTTTAGAA
LOC_Os09g30466
Os.13862.1.S1_at--63--4451Chr09:18565443..18565467 (25 bp)
GCCATTGTACTGACACATTTCTCAA
LOC_Os09g30466
Os.13862.1.S1_at--101--6671Chr09:18565250..18565274 (25 bp)
GTTGCACTGACGGAAGGCTTCAAAT
LOC_Os09g30466
Os.13862.1.S1_at--304--2831Chr09:18565204..18565228 (25 bp)
AAGTAGGTCAGCTGTGCTTCTCACC
LOC_Os09g30466
Os.13862.1.S1_at--334--7531Chr09:18565078..18565102 (25 bp)
GTGGCATTTATATCTCCTATCTTTC
LOC_Os09g30466
Target Sequence 
GAAGTTGCCTTTACAGGTGACACAAAGTCTGATTTTATTCTTGACCCACGAAATGCAGATGCCCTGAGAGCAAAAGTCCT
TATAACTGAGGCAACCTTCCTAGATGACCAAATTGATGTTGATCATGCTCGGGAGCATGGCCACATGCATCTCTCTGAGA
TAATGGAGCACTCCCAATGGTTTAGAAACAAAGCCATTGTACTGACACATTTCTCAAATCGATATAGTCTTGAGGATATT
AGACAAGCTGTTTCCAAACTACAGTCAAAGTTATCTTCAAAGGTTGTTGCACTGACGGAAGGCTTCAAATCTGACTATAG
ATAGTGTATAGAAGTAGGTCAGCTGTGCTTCTCACCCTTACTTGCTGAGAATAACTTGAGTTACTTACACTAGGAATTGG
CCATTCATGAGGAAAAAGGGACAGAATTAATAGGTTTGTGCTGTTTGGCTTTTGTATGTGGCATTTATATCTCCTATCTT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis