Browse Element(s) Details


Os.13874.4.S1_at

Description gb:AK099888.1
DB_XREF= gi:32985097
TID=Os.13874.4
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endoxyloglucan transferase (OSJNBa0035H01.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112I10, full insert sequence.
FL= gb:AK099888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g361308/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13874.4.S1_at--556--10251Chr07:21589080..21589104 (25 bp)
TTTGGTGGCCTGATCAGGATGTGAA
LOC_Os07g36130
Os.13874.4.S1_at--605--3471Chr07:21589094..21589118 (25 bp)
CAGGATGTGAATACGGCGAAATTTT
LOC_Os07g36130
Os.13874.4.S1_at--1102--4071Chr07:21589109..21589133 (25 bp)
GCGAAATTTTTGTGGGTATTTATCT
LOC_Os07g36130
Os.13874.4.S1_at--651--10151Chr07:21589129..21589153 (25 bp)
TATCTAAAGATGTAAGCCTGTGATG
LOC_Os07g36130
Os.13874.4.S1_at--352--1971Chr07:21589155..21589179 (25 bp)
ACTGATGATCATGTTGGGTTGGTTT
LOC_Os07g36130
Os.13874.4.S1_at--476--2551NONE
AACTGAAACTTTGAGCCACCATTTG
NONE
Os.13874.4.S1_at--120--2531NONE
AACTTTGAGCCACCATTTGTCTCTG
NONE
Os.13874.4.S1_at--734--211Chr07:21589227..21589251 (25 bp)
ATTTGTCTCTGCCTCATCATTTTGG
LOC_Os07g36130
Os.13874.4.S1_at--220--9611Chr07:21589240..21589265 (25 bp)
TCATCATTTTGGTCGTTGAGCATTC
LOC_Os07g36130
Os.13874.4.S1_at--448--10251Chr07:21589247..21589272 (25 bp)
TTTGGTCGTTGAGCATTCTCGTTGC
LOC_Os07g36130
Os.13874.4.S1_at--209--1551Chr07:21589260..21589283 (24 bp)
AGCATTCTCGTTGCGTTGCGCTGAA
NONE
Target Sequence 
TTTGGTGGCCTGATCAGGATGTGAATACGGCGAAATTTTTGTGGGTATTTATCTAAAGATGTAAGCCTGTGATGAACTGA
TGATCATGTTGGGTTGGTTTGTTTAATGGTTGAAGAAATGAGGAACAAACTGAAACTTTGAGCCACCATTTGTCTCTGCC
TCATCATTTTGGTCGTTGAGCATTCTCGTTGCGTTGCGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13874.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis