Browse Element(s) Details


Os.13877.1.S1_at

Description gb:BI798729
DB_XREF= gi:15850453
DB_XREF=H114H09
CLONE=H114H09
TID=Os.13877.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13877 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g193106/11retrotransposon protein, putative, LINE subclass
LOC_Os08g045206/11hypothetical protein
LOC_Os04g470595/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g033803/11hypothetical protein
LOC_Os05g061703/11hypothetical protein
LOC_Os10g399403/11hypothetical protein
LOC_Os10g409001/11oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g026001/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19290Os.31893.1.S1_at11/111+10908075..10911416integral membrane family protein, putative, expressed
LOC_Os01g19300OsAffx.31825.1.S1_x_at6/111+10919889..10920134hypothetical protein
LOC_Os01g19300OsAffx.31825.1.S1_at4/111+10919889..10920134hypothetical protein
LOC_Os01g19310OsAffx.15220.1.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310OsAffx.15220.2.S1_s_at11/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.13877.1.S1_at6/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19310Os.30832.2.S1_at1/111+10922677..10925498retrotransposon protein, putative, LINE subclass
LOC_Os01g19320OsAffx.21973.2.A1_at11/111+10928402..10929839hypothetical protein
LOC_Os01g19320OsAffx.14321.1.S1_at1/111+10928402..10929839hypothetical protein
LOC_Os01g19330OsAffx.21972.1.S1_at11/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19330Os.57514.1.S1_x_at1/111+10931766..10932647Cpm7, putative, expressed
LOC_Os01g19340OsAffx.11111.1.S1_x_at11/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.11111.1.S1_at10/111+10942070..10942489hypothetical protein
LOC_Os01g19340OsAffx.26507.1.S1_x_at7/111+10942070..10942489hypothetical protein
LOC_Os01g19350NANA1+10947210..10947614hypothetical protein
LOC_Os01g19360OsAffx.19542.3.S1_x_at4/111+10949248..10953067retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13877.1.S1_at--611--2331NONE
AAAGTTCTGCTTCGTGTGTTATCCC
NONE
Os.13877.1.S1_at--250--4391NONE
GCCACTGGCTCCAGGATTGTGGTCA
NONE
Os.13877.1.S1_at--927--3671NONE
CTAGTCTCCTGCCAGCTATAGAAGG
NONE
Os.13877.1.S1_at--344--8575Chr07:6987008..6987032 (25 bp)
TGGTTCTAGAGTCCTTCCGCTCGGA
NONE
Os.13877.1.S1_at--76--7811NONE
GGTCTTTAGCCAGTGTTACTTGTTT
NONE
Os.13877.1.S1_at--206--102922Chr11:2292122..2292141 (20 bp)
TTTCTTGGGAGTGTAGCGTGGCTCT
NONE
Os.13877.1.S1_at--488--93119Chr07:6987106..6987130 (25 bp)
TCCCGCTGTTTGGAGTTGCGTTTTT
NONE
Os.13877.1.S1_at--137--104920Chr10:21058862..21058886 (25 bp)
TTAACCGTCGTAGTAGTTCCTAGCT
LOC_Os10g39940
Os.13877.1.S1_at--1091--69314Chr07:28997404..28997428 (25 bp)
GTAGTAGTTCCTAGCTTCAAGTCCC
NONE
Os.13877.1.S1_at--54--19Chr10:21058900..21058922 (22 bp)
CCCCTTTAGGCATAACCAGTCTACT
LOC_Os10g39940
Os.13877.1.S1_at--80--1735Chr07:6987179..6987203 (24 bp)
ACCAGTCTACTGATTGCTTTGTGTA
NONE
Target Sequence 
AAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCCACTGGCTCCAGGATTGTGGT
CATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGGCTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAG
AAGGAACGAAACTTCAGGGTTTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGC
TGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTGCCCCCTCCCGCTGTTTGGAG
TTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTCCCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis