Browse Element(s) Details


Os.13907.1.S1_at

Description gb:AY429651.1
DB_XREF= gi:37993737
GEN=GluB
TID=Os.13907.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.13907 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) glutelin type-B (GluB) mRNA, complete cds.
PROD=glutelin type-B
FL= gb:AY429651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g150707/11Glutelin type-B 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15020NANA2+8380540..8381109Zinc finger, C3HC4 type family protein
LOC_Os02g15030OsAffx.24263.1.S1_at11/112+8385914..8386709hypothetical protein
LOC_Os02g15040OsAffx.12047.1.S1_at10/112+8390583..8392147hypothetical protein
LOC_Os02g15050Os.52655.1.S1_x_at2/112+8394293..8395144hypothetical protein
LOC_Os02g15050OsAffx.19426.1.S1_x_at1/112+8394293..8395144hypothetical protein
LOC_Os02g15060OsAffx.12048.1.S1_at10/112+8396789..8399605Zinc finger, C3HC4 type family protein
LOC_Os02g15070Os.13907.1.S1_at7/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15070Os.11489.4.S1_x_at1/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15080NANA2+8405379..8405966Zinc finger, C3HC4 type family protein
LOC_Os02g15090Os.14012.1.S1_at8/112+8406655..8408688Glutelin type-B 2 precursor, putative, expressed
LOC_Os02g15100NANA2+8411433..8411966Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15110NANA2+8417084..8417584Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15120OsAffx.2617.1.S1_at11/112+8422924..8423808Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13907.1.S1_at--92--8831Chr02:8401992..8402016 (25 bp)
TGATTCATACGATCCACGTGCTGGA
LOC_Os02g15070
Os.13907.1.S1_at--327--6711Chr02:8401941..8401964 (24 bp)
GTTCCCTATCCTTAATATCATCCAA
LOC_Os02g15070
Os.13907.1.S1_at--947--411Chr02:8401925..8401949 (25 bp)
ATCATCCAAATGAGTGCTACTAGAG
LOC_Os02g15070
Os.13907.1.S1_at--18--631Chr02:8401788..8401812 (25 bp)
ATGCTATTCTCACACCATTCTGGAA
LOC_Os02g15070
Os.13907.1.S1_at--1020--2791NONE
AAGTTCAAGTCGTCAGTAACCTTGG
NONE
Os.13907.1.S1_at--485--5511Chr02:8401663..8401687 (25 bp)
GAACAACTATTGATTATTCCACAAA
LOC_Os02g15070
Os.13907.1.S1_at--503--51Chr02:8401594..8401618 (25 bp)
ATTGCAATCAACACAAACGCTAATG
LOC_Os02g15070
Os.13907.1.S1_at--1132--2591NONE
AACGCTAATGCCTTTGTGAGCCACC
NONE
Os.13907.1.S1_at--13--4011NONE
CGTGCCTTACCAGTTGATGTTGTTC
NONE
Os.13907.1.S1_at--636--8051Chr02:8401453..8401477 (25 bp)
GGAGACGAGTATGGTCCATTCCCTC
LOC_Os02g15070
Os.13907.1.S1_at--401--6911NONE
GTATGGTCCATTCCCTCCCAGATTA
NONE
Target Sequence 
TGATTCATACGATCCACGTGCTGGAAGGATCANNANNCTTGATAGTCAGAAGTTCCCTATCCTTAATATCATCCAAATGA
GTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTG
ATTCNAAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC
TATTGATTATTCCACAAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACACAAAC
GCTAATGCCTTTGTGAGCCACCNTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTGTTCGCTAATGCG
TATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAACNAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis