Browse Element(s) Details


Os.13930.1.S1_at

Description gb:BI799443
DB_XREF= gi:15851167
DB_XREF=H132G09
CLONE=H132G09
TID=Os.13930.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.13930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0704D04.9 (P0704D04.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4215011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative
LOC_Os01g42120Os.47998.1.S1_at10/111+24208748..24211054expressed protein
LOC_Os01g42130NANA1+24212148..24212573expressed protein
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13930.1.S1_at--214--5051Chr01:24217505..24217529 (25 bp)
GCAGAGCAGCAACATGAAGTTCAGC
LOC_Os01g42150
Os.13930.1.S1_at--1153--2491Chr01:24217495..24217519 (25 bp)
AACATGAAGTTCAGCGCCATTTTCA
LOC_Os01g42150
Os.13930.1.S1_at--911--7331Chr01:24217312..24217459 (25 bp)
GTGCACGGTGGCAGGACACACGCCA
LOC_Os01g42150
Os.13930.1.S1_at--78--8511Chr01:24217304..24217328 (25 bp)
TGGCAGGACACACGCCATCATCGAG
LOC_Os01g42150
Os.13930.1.S1_at--593--3812Chr01:24217095..24217119 (25 bp)
CGGCCAACGCTTAATTAGTTACGTG
LOC_Os01g42150
Os.13930.1.S1_at--747--151Chr01:24217082..24217106 (25 bp)
ATTAGTTACGTGTTCTGTTGGGTGA
LOC_Os01g42150
Os.13930.1.S1_at--691--7391Chr01:24217061..24217085 (25 bp)
GTGAGGATGGTGTCTTCTTGATCTT
LOC_Os01g42150
Os.13930.1.S1_at--385--7751Chr01:24217053..24217077 (25 bp)
GGTGTCTTCTTGATCTTTAGCGATA
LOC_Os01g42150
Os.13930.1.S1_at--403--7711Chr01:24217024..24217048 (25 bp)
GGGTGCACCCATGTGATCCTATACG
LOC_Os01g42150
Os.13930.1.S1_at--593--4331Chr01:24217016..24217040 (25 bp)
CCATGTGATCCTATACGGCTATTTT
LOC_Os01g42150
Os.13930.1.S1_at--174--6371Chr01:24217010..24217034 (25 bp)
GATCCTATACGGCTATTTTTAGAAG
LOC_Os01g42150
Target Sequence 
GCAGAGCAGCAACATGAAGTTCAGCGCCATTTTCATGCTGTTCCTCGCCCTCGGAATCCTCGCCATCGCGGTGCACGGTG
GCAGGACACACGCCATCATCGAGCCGGCGAAGAAATCGGCTGCTGCTGGCGTCGCGCAGCCGCAGTTCGACCCGATCACC
ATCTGCAGCCCGTCCAACTTCTGCATCCCGGAGGCGTGGAGCTCCTGCTACAGGTGCATCGTGAAGCCCGACGACAACCC
GCCCTTCCGAACCATCGACGAGTNCANTAGCAACTGCCCGGTTCCTCCGGCCAACGCTTAATTAGTTACGTGTTCTGTTG
GGTGAGGATGGTGTCTTCTTGATCTTTAGCGATAACGGGGGTGCACCCATGTGATCCTATACGGCTATTTTTAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis