Browse Element(s) Details


Os.13952.1.S1_at

Description gb:AK121683.1
DB_XREF= gi:37991306
TID=Os.13952.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070B21, full insert sequence.
FL= gb:AK121683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g423806/11small zinc finger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13952.1.S1_at--199--10551Chr08:26618206..26618230 (25 bp)
TTCTCGTCGGCTCCAAGCAAAAGCG
NONE
Os.13952.1.S1_at--914--1431Chr08:26618142..26618166 (25 bp)
AGAACTCCGCCGAGATGCAGAGATT
LOC_Os08g42380
Os.13952.1.S1_at--751--811Chr08:26617224..26617248 (25 bp)
ATGGTCGGCAAGCTCACAAGCGTGT
LOC_Os08g42380
Os.13952.1.S1_at--31--7471Chr08:26617203..26617227 (25 bp)
GTGTGCTGGGACAAGTGCATCACCA
LOC_Os08g42380
Os.13952.1.S1_at--731--7591Chr08:26617151..26617175 (25 bp)
GGGAAACGACTTGCCTGACCAACTG
LOC_Os08g42380
Os.13952.1.S1_at--833--6151Chr08:26617120..26617144 (25 bp)
GAGGTTCCTTGACATGAGCGTGATC
LOC_Os08g42380
Os.13952.1.S1_at--832--5871Chr08:26617105..26617129 (25 bp)
GAGCGTGATCATCGCCAAACGGTTT
LOC_Os08g42380
Os.13952.1.S1_at--296--8511Chr08:26617066..26617090 (25 bp)
TGGCAGCACCTGAAGTGGACTACTT
NONE
Os.13952.1.S1_at--275--2431Chr08:26616947..26616971 (25 bp)
AAAAGCGCGCTGTTGTCTCCAGTTT
NONE
Os.13952.1.S1_at--117--8391Chr08:26616894..26616918 (25 bp)
GGCGACGCCCCATTTATATTGCAGG
NONE
Os.13952.1.S1_at--126--8291Chr08:26616860..26616884 (25 bp)
GGCATAATGCTTATTACTTCCGCAG
NONE
Target Sequence 
TTCTCGTCGGCTCCAAGCAAAAGCGTAGCTAGGGTTTTAGGTTTTTGGAGGCTCGGAGCCATGGAGAACTCCGCCGAGAT
GCAGAGATTCATCGAGCAAGAGCAGCAGAAGGCAATGGTGAGCGAGATGGTCGGCAAGCTCACAAGCGTGTGCTGGGACA
AGTGCATCACCAGCACTCCAGGAAGCAAGTTCAGCTCCGGGGAAACGACTTGCCTGACCAACTGCGCTCAGAGGTTCCTT
GACATGAGCGTGATCATCGCCAAACGGTTTGAGATGCAGTAGCATGGCAGCACCTGAAGTGGACTACTTATATCAAATGC
CTCTTTNTTTTTTTCACTTAGCTTCCTTTGAACATGTGAACAATGACAAATTTAACAGTGAATTGTTTTATGTAATTCTG
GGACAAAAGCGCGCTGTTGTCTCCAGTTTTTTGTCANNNNATGCTTTGATCTCTACCCGGCGACGCCCCATTTATATTGC
AGGCAATCTCTAGGCATAATGCTTATTACTTCCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis