Browse Element(s) Details


Os.13987.1.S1_at

Description gb:AK103123.1
DB_XREF= gi:32988332
TID=Os.13987.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119L03, full insert sequence.
FL= gb:AK103123.1 gb:AK070188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5733011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13987.1.S1_at--199--8491Chr04:33909487..33909511 (25 bp)
TGGCGGCCTTTCAGTAAACTCAAAA
LOC_Os04g57330
Os.13987.1.S1_at--157--6211Chr04:33909424..33909448 (25 bp)
GAGGCCCCTCGGTTGACAGGCGAAA
LOC_Os04g57330
Os.13987.1.S1_at--1028--2491Chr04:33909329..33909353 (25 bp)
AACATCGATGCCCATGTGCCTGAGA
LOC_Os04g57330
Os.13987.1.S1_at--922--5411Chr04:33909292..33909316 (25 bp)
GAAGCCTGTTCATATGACTGGCAGA
LOC_Os04g57330
Os.13987.1.S1_at--268--951Chr04:33909185..33909209 (25 bp)
AGGAAAATGCCTTGCGCTGATGTTA
LOC_Os04g57330
Os.13987.1.S1_at--997--6271Chr04:33909167..33909191 (25 bp)
GATGTTACCGTTTACTACTAGCCAG
LOC_Os04g57330
Os.13987.1.S1_at--855--171Chr04:33909129..33909153 (25 bp)
ATTTTTGTCATGCTGTTTTCCCTTT
LOC_Os04g57330
Os.13987.1.S1_at--211--6811Chr04:33909115..33909139 (25 bp)
GTTTTCCCTTTCAAAATGTGCCTGC
LOC_Os04g57330
Os.13987.1.S1_at--63--931Chr04:33909083..33909107 (25 bp)
AGGCATTGCACCTGTAATTCGTCGA
LOC_Os04g57330
Os.13987.1.S1_at--750--2211Chr04:33909041..33909065 (25 bp)
ACAAGCATTTGTTGGTGACCGGAAC
LOC_Os04g57330
Os.13987.1.S1_at--1141--391Chr04:33909000..33909024 (25 bp)
ATCAGGGATCCCATATTATCTCGTG
LOC_Os04g57330
Target Sequence 
TGGCGGCCTTTCAGTAAACTCAAAAACAGACTCAGAAGGAACCGACCAGCGGCCAAGACTGTCGAGGCCCCTCGGTTGAC
AGGCGAAAGCACCATCTGAAAATGTTAACAGTAACTCTCAGGCAGCAGGATGTGCATGATTCCTCTGAAATACAGATGAA
CATCGATGCCCATGTGCCTGAGAATAGAAACCAAAGAAGCCTGTTCATATGACTGGCAGACGTTCCAAATTTTGCAGGAT
TGGAACATCCTTTTCAATAAGATTAGGATCGGAACTAGGGAGATTATCTTCCTAATTCTCATAGGAAAATGCCTTGCGCT
GATGTTACCGTTTACTACTAGCCAGGCTGATATTTGTCATTTTTGTCATGCTGTTTTCCCTTTCAAAATGTGCCTGCCTC
GTCGAGGCATTGCACCTGTAATTCGTCGATGGACACATGAGAATGCACAAGCATTTGTTGGTGACCGGAACCGATGAGCT
GGGAATAATCAGGGATCCCATATTATCTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis