Browse Element(s) Details


Os.14047.1.S1_at

Description gb:AK067450.1
DB_XREF= gi:32977468
TID=Os.14047.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C27594(C52325)~unknown protein (P0482D04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106M04, full insert sequence.
FL= gb:AK067450.1 gb:AK068446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7011011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14047.1.S1_at--1120--3731Chr01:40900552..40900576 (25 bp)
CTAATTGTCCATGAGATGATCAGAT
LOC_Os01g70110
Os.14047.1.S1_at--1128--9951Chr01:40900594..40900618 (25 bp)
TACCGTGTTAGTGTTTGACTAGGCC
LOC_Os01g70110
Os.14047.1.S1_at--141--8931Chr01:40900609..40900633 (25 bp)
TGACTAGGCCGTTAATTACCATGCT
LOC_Os01g70110
Os.14047.1.S1_at--590--891Chr01:40900614..40900638 (25 bp)
AGGCCGTTAATTACCATGCTTTCAT
LOC_Os01g70110
Os.14047.1.S1_at--928--631Chr01:40900629..40900653 (25 bp)
ATGCTTTCATGTCCTAATCAGCGCC
LOC_Os01g70110
Os.14047.1.S1_at--647--9751Chr01:40900643..40900667 (25 bp)
TAATCAGCGCCCTTCTTTTGCTCTA
LOC_Os01g70110
Os.14047.1.S1_at--840--4311Chr01:40900653..40900677 (25 bp)
CCTTCTTTTGCTCTACTAATGTCTT
LOC_Os01g70110
Os.14047.1.S1_at--980--1231Chr01:40900692..40900716 (25 bp)
AGTTGTAATTCCTAGCAAGAGAGAA
LOC_Os01g70110
Os.14047.1.S1_at--234--6011Chr01:40900710..40900734 (25 bp)
GAGAGAATCAGAATCGAGCTCAAAC
LOC_Os01g70110
Os.14047.1.S1_at--330--2251Chr01:40900760..40900784 (25 bp)
AAATTCTCATCTTTGTTTGAGCTCA
LOC_Os01g70110
Os.14047.1.S1_at--621--9291Chr01:40900786..40900810 (25 bp)
TCCGAACTCCGAAGATAATCAATTA
LOC_Os01g70110
Target Sequence 
CTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATG
CTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGA
GAGAATCAGAATCGAGCTCAAACAANGAANAGAAAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCANTCCGAA
CTCCGAAGATAATCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis