Browse Element(s) Details


Os.14047.2.S1_x_at

Description gb:NM_189971.1
DB_XREF= gi:34907025
GEN=P0482D04.6
TID=Os.14047.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C27594(C52325)~unknown protein (P0482D04.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST C27594(C52325)~unknown protein (P0482D04.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7011011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14047.2.S1_x_at--276--791Chr01:40899974..40899998 (25 bp)
ATGGGACCTTCCAGGTACGCGCGCG
LOC_Os01g70110
Os.14047.2.S1_x_at--407--4711Chr01:40899996..40900020 (25 bp)
GCGGCCACGATCATGGCGCTAGCTT
LOC_Os01g70110
Os.14047.2.S1_x_at--474--871Chr01:40900008..40900032 (25 bp)
ATGGCGCTAGCTTCTTCGTTTTTGG
LOC_Os01g70110
Os.14047.2.S1_x_at--670--8491Chr01:40900040..40900064 (25 bp)
TGGCATTGCGTTGACGAGCATCGGT
LOC_Os01g70110
Os.14047.2.S1_x_at--756--5771Chr01:40900052..40900076 (25 bp)
GACGAGCATCGGTGGCGGATTATTT
LOC_Os01g70110
Os.14047.2.S1_x_at--85--491Chr01:40900059..40900083 (25 bp)
ATCGGTGGCGGATTATTTACAGGCG
LOC_Os01g70110
Os.14047.2.S1_x_at--214--3971Chr01:40900067..40900091 (25 bp)
CGGATTATTTACAGGCGAGGGAGAC
LOC_Os01g70110
Os.14047.2.S1_x_at--729--5991Chr01:40900087..40900111 (25 bp)
GAGACGGCGAGAGGTACTTCTTCCA
LOC_Os01g70110
Os.14047.2.S1_x_at--856--4391Chr01:40900341..40900365 (25 bp)
GCCAACGACGTCTGGGTGGTCTGCC
LOC_Os01g70110
Os.14047.2.S1_x_at--57--9471Chr01:40900351..40900375 (25 bp)
TCTGGGTGGTCTGCCGCGTATTCAA
LOC_Os01g70110
Os.14047.2.S1_x_at--1060--6871Chr01:40900368..40900392 (25 bp)
GTATTCAAGAAGACCACCACGCTGG
LOC_Os01g70110
Target Sequence 
ATGGGACCTTCCAGGTACGCGCGCGGCCACGATCATGGCGCTAGCTTCTTCGTTTTTGGGGGGTTTTGGCATTGCGTTGA
CGAGCATCGGTGGCGGATTATTTACAGGCGAGGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCTGG
CGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGCTCGTCGTCGC
GCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGG
CCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTC
AAGAAGACCACCACGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14047.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis