Browse Element(s) Details


Os.14080.1.S1_s_at

Description gb:CB647641
DB_XREF= gi:29642634
DB_XREF=OSJNEb10K10.r
CLONE=OSJNEb10K10
TID=Os.14080.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14080 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195096.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4712011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47070Os.51210.1.S1_at11/113+26572791..26576035early-responsive to dehydration protein, putative, expressed
LOC_Os03g47079NANA3+26584350..26586009NA
LOC_Os03g47090NANA3+26589020..26589975hypothetical protein
LOC_Os03g47100OsAffx.9996.1.S1_x_at1/113+26590848..26591531retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g47110NANA3+26595746..26597987hypothetical protein
LOC_Os03g47120Os.14080.1.S1_s_at11/113+26600793..26607017CBS domain-containing protein, putative, expressed
LOC_Os03g47130Os.41695.15.S1_s_at11/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.3.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.4.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.2.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.5.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47140Os.22796.1.S1_at11/113+26628429..26631307expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14080.1.S1_s_at--986--2771Chr03:26605465..26605489 (25 bp)
AAGAGCTGCCCCAACTCTCAGAATT
LOC_Os03g47120
Os.14080.1.S1_s_at--893--5391Chr03:26605585..26605609 (25 bp)
GAAGCTGTCGGTATCATAACTATGG
LOC_Os03g47120
Os.14080.1.S1_s_at--709--6271Chr03:26605612..26605636 (25 bp)
GATGTCATAGAAGAGCTGCTCCAGG
LOC_Os03g47120
Os.14080.1.S1_s_at--713--5371Chr03:26605964..26605988 (25 bp)
GAAGAACAATGACACATGCCGCAGT
LOC_Os03g47120
Os.14080.1.S1_s_at--252--1171Chr03:26605986..26606010 (25 bp)
AGTCACTTCCCATTTTGAACCAGAA
LOC_Os03g47120
Os.14080.1.S1_s_at--811--5491Chr03:26606008..26606032 (25 bp)
GAAAATCGGTGCCATACCTTTCTTT
LOC_Os03g47120
Os.14080.1.S1_s_at--483--4431Chr03:26606018..26606042 (25 bp)
GCCATACCTTTCTTTTGGCTGAGGG
LOC_Os03g47120
Os.14080.1.S1_s_at--593--7291Chr03:26606046..26606070 (25 bp)
GTGCCGGGTGCAAATATGTGTTTAT
LOC_Os03g47120
Os.14080.1.S1_s_at--1152--4011Chr03:26606078..26606102 (25 bp)
CGTAATACTGTACTTCAGCGTAGAT
LOC_Os03g47120
Os.14080.1.S1_s_at--637--7471Chr03:26606179..26606203 (25 bp)
GTGTGATTTTGCTTGGTCCTGGGAC
LOC_Os03g47120
Os.14080.1.S1_s_at--659--9871Chr03:26606237..26606261 (25 bp)
TATCCCGGGATTTTGACGCGGTAAT
LOC_Os03g47120
Target Sequence 
AAGAGCTGCCCCAACTCTCAGAATTCTAATAGAGGGAACAGGAATAGAAAATGGTCCAAAGATCAATCAGATGTTCTTCA
AATACNANTGAAGANCCATTGCCGACNCTGAATGAAGATGAAGAAGCTGTCGGTATCATAACTATGGAGGATGTCATAGA
AGAGCTGCTCCAGGAGGAGATATACGATGAGACAGACGTACATGTTGAAGAACAATGACACATGCCGCAGTCACTTCCCA
TTTTGAACCAGAAAATCGGTGCCATACCTTTCTTTTGGCTGAGGGGAAGTGCCGGGTGCAAATATGTGTTTATATTAGTA
CGTAATACTGTACTTCAGCGTAGATAGAAACGGGGGTTGAATTGGTTCATTTGAACAGCTGGTACGAATAGTAGTNCAGT
AGTAGAGAGGGACAAAGGNTNGTGTGATTTTGCTTGGTCCTGGGACAGTAGGATTGCGTAGTTATGAAACTGTACTGGTT
ATCCCGGGATTTTGACGCGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14080.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis