Browse Element(s) Details


Os.14087.1.S1_at

Description gb:CF333548
DB_XREF= gi:33815388
DB_XREF=JMT--02-H21.b1
CLONE=JMT--02-H21
TID=Os.14087.1
CNT=15
FEA=EST
TIER=Stack
STK=12
UG=Os.14087 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_193040.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2955011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29530Os.7819.1.S1_at11/112+17553350..17556934Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os02g29540OsAffx.2794.1.S1_at11/112+17558469..17558870hypothetical protein
LOC_Os02g29550Os.14087.1.S1_at11/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550Os.14602.1.S1_at9/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29550OsAffx.32283.1.S1_at1/112+17569259..17576355AP2 domain containing protein, expressed
LOC_Os02g29570Os.27435.1.S1_x_at2/112+17582204..17588100retrotransposon protein, putative, unclassified
LOC_Os02g29580OsAffx.2795.1.S1_at11/112+17595066..17595673hypothetical protein
LOC_Os02g29590Os.31640.1.S1_at11/112+17600227..17601496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14087.1.S1_at--724--5851Chr02:17575660..17575684 (25 bp)
GAGCCAAACTTTGAACTTTCTGAGG
LOC_Os02g29550
Os.14087.1.S1_at--426--2931Chr02:17575717..17575741 (25 bp)
AAGGACTTCTTGGATATGACTCGAG
LOC_Os02g29550
Os.14087.1.S1_at--415--8951Chr02:17575733..17575757 (25 bp)
TGACTCGAGACACCATAACCAGCAA
LOC_Os02g29550
Os.14087.1.S1_at--727--351Chr02:17575919..17575943 (25 bp)
ATAAGACGGACTCGCTGGTAGGACA
LOC_Os02g29550
Os.14087.1.S1_at--43--1391Chr02:17576029..17576053 (25 bp)
AGACTGCCACCAGAGTTCATGGACA
LOC_Os02g29550
Os.14087.1.S1_at--576--8131Chr02:17576049..17576073 (25 bp)
GGACAGCCAGATTGGGTCTTTCAAC
LOC_Os02g29550
Os.14087.1.S1_at--450--7671Chr02:17576062..17576086 (25 bp)
GGGTCTTTCAACAGATTCGTTTCAA
LOC_Os02g29550
Os.14087.1.S1_at--836--10671Chr02:17576099..17576123 (25 bp)
TTCCATTTAGGTTTTTGTTCTCTCA
LOC_Os02g29550
Os.14087.1.S1_at--73--3571Chr02:17576141..17576165 (25 bp)
CATAAGGGCCCTGATGGTCTGATAA
LOC_Os02g29550
Os.14087.1.S1_at--856--4851Chr02:17576173..17576197 (25 bp)
GCTAGAGAAATCATGCCATCCCATA
LOC_Os02g29550
Os.14087.1.S1_at--693--10091Chr02:17576220..17576244 (25 bp)
TAGGAACACATTTCTCTGAGCAAAT
LOC_Os02g29550
Target Sequence 
GAGCCAAACTTTGAACTTTCTGAGGAAGAGAAGAAAGAACTACAGAATTACACCTGGAAGGACTTCTTGGATATGACTCG
AGACACCATAACCAGCAAAAAACAAAGGAAAGTTGGATTAATAAGGCGCAATAAGACGGACTCGCTGGTAGGACAGAGTG
ATGGTGATACTGAGATGATCAATGGTGGCGGCTCATCGCACTCGGAAGATGGAGATGCTGAGACCTCAGCATCTTAATTA
AGACTGCCACCAGAGTTCATGGACAGCCAGATTGGGTCTTTCAACAGATTCGTTTCAATGAAGACATAATTTCCATTTAG
GTTTTTGTTCTCTCAATAATTAATTTCATGTGCATAAGGGCCCTGATGGTCTGATAAAGGTTAGGCTAGAGAAATCATGC
CATCCCATATAAAGTTGGAGATGGTCCATTATAGGAACACATTTCTCTGAGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis