Browse Element(s) Details


Os.14185.2.S1_a_at

Description gb:CB644816
DB_XREF= gi:29639807
DB_XREF=OSJNEb06D02.r
CLONE=OSJNEb06D02
TID=Os.14185.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14185 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_173003.1 (A.thaliana) adenine nucleotide translocase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1174011/11Plastidic ATP/ADP-transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11720NANA2+6038439..6039470hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g11730Os.35344.18.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730Os.35344.3.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730OsAffx.22940.5.S1_x_at3/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005471molecular_functionATP:ADP antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14185.2.S1_a_at--180--8011Chr02:6059664..6059688 (25 bp)
GGAGGCGCCTTGATCCAGCAGTTCA
LOC_Os02g11740
Os.14185.2.S1_a_at--1035--10831Chr02:6059701..6059725 (25 bp)
TTGGATCTCTCGCAAATTCTACACC
LOC_Os02g11740
Os.14185.2.S1_a_at--428--111Chr02:6059716..6059740 (25 bp)
ATTCTACACCCTACCTGGGAGGAAT
LOC_Os02g11740
Os.14185.2.S1_a_at--408--31Chr02:6059744..6059768 (25 bp)
ATTGGTAATTGTTCTTGCCTGGTTG
LOC_Os02g11740
Os.14185.2.S1_a_at--969--8731Chr02:6059774..6059798 (25 bp)
TGTAAGGTCCCTTGACTCACAGTTC
LOC_Os02g11740
Os.14185.2.S1_a_at--1048--1211Chr02:6059794..6059818 (25 bp)
AGTTCTCCCCACTGGCAAAGCAAGA
LOC_Os02g11740
Os.14185.2.S1_a_at--1133--1391Chr02:6059848..6059872 (25 bp)
AGACGGTCGAAACAACTGCTCAAGT
LOC_Os02g11740
Os.14185.2.S1_a_at--354--7811Chr02:6059878..6059902 (25 bp)
GGTCAGGAAATGGTTCTCTCCAAGA
LOC_Os02g11740
Os.14185.2.S1_a_at--992--1431Chr02:6059917..6059941 (25 bp)
AGAACTCTGCGAATGGTTCGGCCAT
LOC_Os02g11740
Os.14185.2.S1_a_at--775--5331Chr02:6059978..6060002 (25 bp)
GAAGTCTGGTCAACAATCTCAATAA
LOC_Os02g11740
Os.14185.2.S1_a_at--701--2431Chr02:6060049..6060073 (25 bp)
AAAAGCTGCTTAGTTTGGCCTGCCC
LOC_Os02g11740
Target Sequence 
GGAGGCGCCTTGATCCAGCAGTTCATGATCTTATCATTTGGATCTCTCGCAAATTCTACACCCTACCTGGGAGGAATTCT
ATTGGTAATTGTTCTTGCCTGGTTGGGTGCTGTAAGGTCCCTTGACTCACAGTTCTCCCCACTGGCAAAGCAAGAGCTTG
AGAAGGAGAAAATGCTGAAAGCAAAGACGGTCGAAACAACTGCTCAAGTTGTTGGGTCAGGAAATGGTTCTCTCCAAGAA
ACTCTAGCCAGTGAGAACTCTGCGAATGGTTCGGCCATCAAAGTGTCTCAGGAACCTGAGAGTACGCCCTCGGAGAAGTC
TGGTCAACAATCTCAATAAGTTCTTTGCCTTGCAAATTTAGTTAGTATAAGTCTTCCGTGGAATCAAAAGCTGCTTAGTT
TGGCCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14185.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis