Browse Element(s) Details


Os.14283.1.A1_at

Description gb:BI805581
DB_XREF= gi:15852785
DB_XREF=S041D10
CLONE=S041D10
TID=Os.14283.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.14283 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_196482.1 (A.thaliana) GTP-binding protein LepA homolog (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0630011/11GTP-binding protein LepA containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14283.1.A1_at--285--2891Chr02:3144599..3144623 (25 bp)
AAGGGTTGATGTTCCTCAAGAGGCA
LOC_Os02g06300
Os.14283.1.A1_at--915--4291Chr02:3144586..3144610 (25 bp)
CCTCAAGAGGCATTTATGGCTGTGT
LOC_Os02g06300
Os.14283.1.A1_at--725--8731Chr02:3144501..3144525 (25 bp)
TGTAAAGACCTCTGTTTGGCCTCAA
LOC_Os02g06300
Os.14283.1.A1_at--214--6871Chr02:3144488..3144512 (25 bp)
GTTTGGCCTCAACTGAATCTAATTC
LOC_Os02g06300
Os.14283.1.A1_at--2--271Chr02:3144449..3144473 (25 bp)
ATAGTTTGTTTTCAGCTGGGCCAGA
LOC_Os02g06300
Os.14283.1.A1_at--269--4731Chr02:3144435..3144459 (25 bp)
GCTGGGCCAGAGGAACCAATTGACA
LOC_Os02g06300
Os.14283.1.A1_at--1029--8071Chr02:3144388..3144412 (25 bp)
GGAGCTAATCTGACATGCACTAATT
LOC_Os02g06300
Os.14283.1.A1_at--548--5111Chr02:3144372..3144396 (25 bp)
GCACTAATTTTGTTCCATATGTCAG
LOC_Os02g06300
Os.14283.1.A1_at--955--2991Chr02:3144331..3144355 (25 bp)
AATGATGTGGTCACACAGCTCTGCC
LOC_Os02g06300
Os.14283.1.A1_at--862--10751Chr02:3144257..3144281 (25 bp)
TTGGTTATCGTTAATTCCCGTCACT
LOC_Os02g06300
Os.14283.1.A1_at--133--3151Chr02:3144245..3144269 (25 bp)
AATTCCCGTCACTGAGTTTGTATCA
LOC_Os02g06300
Target Sequence 
AAGGGTTGATGTTCCTCAAGAGGCATTTATGGCTGTGTTGAAACTAGAAAAGGAGGTGCTATGAAACAGCTTTGCAATCA
GCACAAGTCTATCGTTTGTGTAAAGACCTCTGTTTGGCCTCAACTGAATCTAATTCATTTGAGAGGAAGCATAGTTTGTT
TTCAGCTGGGCCAGAGGAACCAATTGACAACATATCCATGTCGGAAAGTAAGGAGCTAATCTGACATGCACTAATTTTGT
TCCATATGTCAGGCTANGAAGCCCCAAAAATGATGTGGTCACACAGCTCTGCCAGACATTTNTGCGATCTTCTTATACCA
AATAGAGTAGTACGCATTTTGTTTGGTTATCGTTAATTCCCGTCACTGAGTTTGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14283.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis