Browse Element(s) Details


Os.14522.1.S1_s_at

Description gb:BI806377
DB_XREF= gi:15853581
DB_XREF=S062D11
CLONE=S062D11
TID=Os.14522.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14522 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2433911/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24270NANA3+13794977..13801132transposon protein, putative, unclassified
LOC_Os03g24280NANA3+13801778..13805015transposon protein, putative, unclassified
LOC_Os03g24290OsAffx.13000.1.S1_at11/113+13807262..13807624hypothetical protein
LOC_Os03g24300Os.55275.1.S1_s_at11/113+13812327..13813438expressed protein
LOC_Os03g24310NANA3+13816198..13816425hypothetical protein
LOC_Os03g24320NANA3+13818030..13818260transposon protein, putative, unclassified
LOC_Os03g24339Os.14522.1.S1_s_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339OsAffx.13002.1.S1_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.14522.1.S1_at2/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.8539.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.24327.1.A1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.32984.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.45957.4.S1_x_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24360NANA3+13844696..13850851transposon protein, putative, unclassified
LOC_Os03g24370NANA3+13851483..13854719transposon protein, putative, unclassified
LOC_Os03g24380Os.8539.1.S1_at11/113+13857887..13861346glutathione peroxidase, putative, expressed
LOC_Os03g24390OsAffx.3305.1.S1_at11/113+13862507..13866586rhomboid protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048497biological_processmaintenance of floral organ identity
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14522.1.S1_s_at--230--1131Chr03:13821015..13821039 (25 bp)
AGTGCACTACGGACGACCATCAGAT
LOC_Os03g24339
Os.14522.1.S1_s_at--631--1031Chr03:13820982..13821006 (25 bp)
AGGTCCTTGCTCTGGGTGGTCTATG
LOC_Os03g24339
Os.14522.1.S1_s_at--646--7111Chr03:13820949..13820973 (25 bp)
GTCATCGAATTATTCTCCCTCCAGA
LOC_Os03g24339
Os.14522.1.S1_s_at--893--8071Chr03:13820916..13820940 (25 bp)
GGAGCCTCCAGTTCCACATGTAGGA
LOC_Os03g24339
Os.14522.1.S1_s_at--253--4871Chr03:13820341..13820450 (25 bp)
GCTATCCGTGAATGGGTCGATGCTT
LOC_Os03g24339
Os.14522.1.S1_s_at--646--7211Chr03:13820326..13820350 (25 bp)
GTCGATGCTTTTGTCAGCTGGGCAC
LOC_Os03g24339
Os.14522.1.S1_s_at--1088--1611Chr03:13820311..13820335 (25 bp)
AGCTGGGCACTTCGAGATGCTTTCG
LOC_Os03g24339
Os.14522.1.S1_s_at--1107--6331Chr03:13820296..13820320 (25 bp)
GATGCTTTCGTTGATGCTTTCTGAT
LOC_Os03g24339
Os.14522.1.S1_s_at--171--6571Chr03:13820274..13820298 (25 bp)
GATTCATCGGTTTGGTTCCTTCACA
LOC_Os03g24339
Os.14522.1.S1_s_at--907--6131Chr03:13820231..13820255 (25 bp)
GAGGGAGATAAGTACCTGCCTTCCT
LOC_Os03g24339
Os.14522.1.S1_s_at--1133--3811Chr03:13820216..13820240 (25 bp)
CTGCCTTCCTCCTTGTAAATATGTA
LOC_Os03g24339
Target Sequence 
AGTGCACTACGGACGACCATCAGATCCTCCACCAGGTCCTTGCTCTGGGTGGTCTATGCCTCCTCGGTCATCGAATTATT
CTCCCTCCAGACATTCTATGGAGCCTCCAGTTCCACATGTAGGAGCACATGGTAGCTGGAGACCAAGATAACATTTTTGC
TATCCGTGAATGGGTCGATGCTTTTGTCAGCTGGGCACTTCGAGATGCTTTCGTTGATGCTTTCTGATTCATCGGTTTGG
TTCCTTCACATGAAGACCCACCAAAAGGAGGGAGATAAGTACCTGCCTTCCTCCTTGTAAATATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14522.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis