Browse Element(s) Details


OsAffx.13000.1.S1_at

Description tigr:9631.m02367
TID=OsAffx.13000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2429011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24260Os.27639.1.S1_x_at9/113+13780986..13785901transposon protein, putative, unclassified
LOC_Os03g24260OsAffx.8980.1.S1_at9/113+13780986..13785901transposon protein, putative, unclassified
LOC_Os03g24270NANA3+13794977..13801132transposon protein, putative, unclassified
LOC_Os03g24280NANA3+13801778..13805015transposon protein, putative, unclassified
LOC_Os03g24290OsAffx.13000.1.S1_at11/113+13807262..13807624hypothetical protein
LOC_Os03g24300Os.55275.1.S1_s_at11/113+13812327..13813438expressed protein
LOC_Os03g24310NANA3+13816198..13816425hypothetical protein
LOC_Os03g24320NANA3+13818030..13818260transposon protein, putative, unclassified
LOC_Os03g24339Os.14522.1.S1_s_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339OsAffx.13002.1.S1_at11/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.14522.1.S1_at2/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.8539.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.24327.1.A1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.32984.1.S1_at1/113+13819965..13839499PWWP domain containing protein, expressed
LOC_Os03g24339Os.45957.4.S1_x_at1/113+13819965..13839499PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13000.1.S1_at--482--8591Chr03:13807317..13807341 (25 bp)
TGGTCACCCAGCATGCCAGGAGCGG
LOC_Os03g24290
OsAffx.13000.1.S1_at--244--9351Chr03:13807356..13807380 (25 bp)
TCGCGGGAGCAGTTCGCGGTTACAA
LOC_Os03g24290
OsAffx.13000.1.S1_at--299--11Chr03:13807366..13807390 (25 bp)
AGTTCGCGGTTACAACAACGTCTCG
LOC_Os03g24290
OsAffx.13000.1.S1_at--1147--6751Chr03:13807374..13807398 (25 bp)
GTTACAACAACGTCTCGGCGTCGCA
LOC_Os03g24290
OsAffx.13000.1.S1_at--300--7851Chr03:13807412..13807436 (25 bp)
GGTAGTGCCAGTGGTTCAGCCAACA
LOC_Os03g24290
OsAffx.13000.1.S1_at--148--7891Chr03:13807424..13807448 (25 bp)
GGTTCAGCCAACAAACAGGCGGCAA
LOC_Os03g24290
OsAffx.13000.1.S1_at--735--8271Chr03:13807465..13807489 (25 bp)
GGCATCGCGGCAGCGGCAAGTAACA
LOC_Os03g24290
OsAffx.13000.1.S1_at--449--3371Chr03:13807488..13807512 (25 bp)
CAGAAACGGTAATGGCGGCGTCGCA
LOC_Os03g24290
OsAffx.13000.1.S1_at--817--631Chr03:13807518..13807542 (25 bp)
ATGCAGCAAGGATACGCAAGTTAGA
LOC_Os03g24290
OsAffx.13000.1.S1_at--306--10411Chr03:13807551..13807575 (25 bp)
TTATGTTTTACAGATCCTTCGCCGC
LOC_Os03g24290
OsAffx.13000.1.S1_at--726--9331Chr03:13807569..13807593 (25 bp)
TCGCCGCTTTCCTACTCGGTGCTTA
LOC_Os03g24290
Target Sequence 
TGGTCACCCAGCATGCCAGGAGCGGCAGCGGCAGTGGCCTCGCGGGAGCAGTTCGCGGTTACAACAACGTCTCGGCGTCG
CACGCAGCTGCTGCTGGTAGTGCCAGTGGTTCAGCCAACAAACAGGCGGCAAGGGCGATGGCGACGACGGCATCGCGGCA
GCGGCAAGTAACAGAAACGGTAATGGCGGCGTCGCAGAATAATGCAGCAAGGATACGCAAGTTAGAGGAGGAGGTTATGT
TTTACAGATCCTTCGCCGCTTTCCTACTCGGTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis