Browse Element(s) Details


Os.14546.1.S1_at

Description gb:AK100199.1
DB_XREF= gi:32985408
TID=Os.14546.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038E06, full insert sequence.
FL= gb:AK100199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2665011/117-dehydrocholesterol reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0009918molecular_functionsterol delta7 reductase activity
GO:0050613molecular_functiondelta14-sterol reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14546.1.S1_at--887--10351Chr02:15636572..15636671 (25 bp)
TTTTTGATCATTTCCTGCCGTACTT
LOC_Os02g26650
Os.14546.1.S1_at--1073--4471Chr02:15636556..15636580 (25 bp)
GCCGTACTTCTATGTGATCTTTCTG
LOC_Os02g26650
Os.14546.1.S1_at--798--9471Chr02:15636535..15636559 (25 bp)
TCTGACCATATTGCTGTTCGACCGA
LOC_Os02g26650
Os.14546.1.S1_at--718--5831Chr02:15635809..15635833 (25 bp)
GACCATGTTCAACAACTTCTCGGGA
LOC_Os02g26650
Os.14546.1.S1_at--517--5191Chr02:15635765..15635789 (25 bp)
GAATTCCTTTCTCTGGGACGATCTA
LOC_Os02g26650
Os.14546.1.S1_at--258--8111Chr02:15635750..15635774 (25 bp)
GGACGATCTACTGCTGTTTGTGTAA
LOC_Os02g26650
Os.14546.1.S1_at--864--6571Chr02:15635695..15635719 (25 bp)
GATTCGGGCTGATTGGTTTCAACCT
LOC_Os02g26650
Os.14546.1.S1_at--653--10771Chr02:15635669..15635693 (25 bp)
TTGAGTTTGCTGTATCCAACCCTGA
LOC_Os02g26650
Os.14546.1.S1_at--14--1311Chr02:15635641..15635665 (25 bp)
AGATGAGTCAACGATGCCGCCAAAT
LOC_Os02g26650
Os.14546.1.S1_at--66--6851Chr02:15635536..15635560 (25 bp)
GTTTCGACTTCATTTTTCTGCTAGA
LOC_Os02g26650
Os.14546.1.S1_at--255--8891Chr02:15635480..15635504 (25 bp)
TGAGGTTCTGTACTGCTCGAATAAT
LOC_Os02g26650
Target Sequence 
TTTTTGATCATTTCCTGCCGTACTTCTATGTGATCTTTCTGACCATATTGCTGTTCGACCGAGCTAAAAGGGATGATGAC
CGATGCTCATCAAAGTATGGCAAGTATTGGAAGATGTACTGCAACAAAGTACCGTGCAGGGTTATTCCTGGCATTTACTG
AGGTTGTTGACCATGTTCAACAACTTCTCGGGATAAAACTCAGCCATGTTGTGAATTCCTTTCTCTGGGACGATCTACTG
CTGTTTGTGTAATATGTCATTAGCTTGATGTATGCAGGATTAGATTCGGGCTGATTGGTTTCAACCTTTTGAGTTTGCTG
TATCCAACCCTGACACAGATGAGTCAACGATGCCGCCAAATCGTGATTTTTCTTGTTAGCTCGCTGATAGGAGAGATGAT
TGCAGGATCATAGTTTGTGTAGTTTGTACCTTATAATGGATGTTTCGACTTCATTTTTCTGCTAGAAGCGATTAGGCAGC
ACGAAAATGAAATTGTTTGAGGTTCTGTACTGCTCGAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis