Browse Element(s) Details


Os.14561.1.S1_at

Description gb:AK101363.1
DB_XREF= gi:32986572
TID=Os.14561.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035I21, full insert sequence.
FL= gb:AK101363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4276011/11Type IIB DNA topoisomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42730Os.26784.1.S1_a_at11/1112+26514861..26522352Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein
LOC_Os12g42760Os.14561.1.S1_at11/1112+26544405..26547383Type IIB DNA topoisomerase family protein, expressed
LOC_Os12g42770OsAffx.7871.1.S1_x_at10/1112+26550292..26551574hypothetical protein
LOC_Os12g42770OsAffx.7871.1.S1_at8/1112+26550292..26551574hypothetical protein
LOC_Os12g42770Os.26789.1.A1_at1/1112+26550292..26551574hypothetical protein
LOC_Os12g42780NANA12+26553621..26553929hypothetical protein
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0009957biological_processepidermal cell fate specification
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14561.1.S1_at--791--5291Chr12:26546729..26546753 (25 bp)
GAAGGCCTCTTTTGAAGCTATTCAT
LOC_Os12g42760
Os.14561.1.S1_at--138--3251Chr12:26546776..26546800 (25 bp)
CAACCAATTTGCTTCCGGATATGAT
LOC_Os12g42760
Os.14561.1.S1_at--1162--7971Chr12:26547079..26547103 (25 bp)
GGATGCTCAAGCTTCACTCGTATGT
LOC_Os12g42760
Os.14561.1.S1_at--538--3331Chr12:26547093..26547117 (25 bp)
CACTCGTATGTTTGGCTTCTGATAA
LOC_Os12g42760
Os.14561.1.S1_at--573--291Chr12:26547147..26547171 (25 bp)
ATAGTTGTCTTCTAGGTGATCGATC
LOC_Os12g42760
Os.14561.1.S1_at--570--6391Chr12:26547164..26547188 (25 bp)
GATCGATCTCCTAAATACTTGCACC
LOC_Os12g42760
Os.14561.1.S1_at--1052--511Chr12:26547216..26547240 (25 bp)
ATCGATCTCCTAAGTACCTTTCTGT
LOC_Os12g42760
Os.14561.1.S1_at--664--8851Chr12:26547290..26547314 (25 bp)
TGATCGATCTCTCCTAAGTGCTTGC
LOC_Os12g42760
Os.14561.1.S1_at--9--2871Chr12:26547305..26547329 (25 bp)
AAGTGCTTGCACTATTGTTACTGAA
LOC_Os12g42760
Os.14561.1.S1_at--38--5351Chr12:26547327..26547351 (25 bp)
GAAGTTGTCTTCTAGCACTATTGGT
LOC_Os12g42760
Os.14561.1.S1_at--709--7831Chr12:26547349..26547373 (25 bp)
GGTACTGCAGTTGTTTTTTCGCTGA
LOC_Os12g42760
Target Sequence 
GAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAG
TACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGAGGACTGATTTGGAGGACTC
TAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTT
GTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCT
TCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTT
CTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCAC
TATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis