Browse Element(s) Details


Os.14570.1.S1_at

Description gb:AK068572.1
DB_XREF= gi:32978589
TID=Os.14570.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013156K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156K22, full insert sequence.
FL= gb:AK068572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4620011/11Glycosyl hydrolases family 35 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46150OsAffx.15123.2.S1_at11/115+26685194..26686429F-box domain containing protein
LOC_Os05g46160OsAffx.15123.3.S1_at11/115+26688690..26689901F-box domain containing protein
LOC_Os05g46170OsAffx.11109.1.S1_at4/115+26693587..26694873hypothetical protein
LOC_Os05g46180OsAffx.15123.2.S1_at1/115+26697243..26698535hypothetical protein
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14570.1.S1_at--1008--7931Chr05:26712091..26712115 (25 bp)
GGATTTCAGAGGAACCGGCATTCTA
LOC_Os05g46200
Os.14570.1.S1_at--320--31Chr05:26711850..26711874 (25 bp)
ATTGGACCACAATGCGCTCTGTATG
LOC_Os05g46200
Os.14570.1.S1_at--196--4571Chr05:26711820..26711844 (25 bp)
GCGCCGATCCTCAAACCTGGAGATA
LOC_Os05g46200
Os.14570.1.S1_at--1060--8971Chr05:26711469..26711493 (25 bp)
TGAACTGCATAGTCCAAACCCTGAG
LOC_Os05g46200
Os.14570.1.S1_at--611--2611Chr05:26711453..26711477 (25 bp)
AACCCTGAGCTCACCATCAAGTTAG
LOC_Os05g46200
Os.14570.1.S1_at--1160--991Chr05:26711425..26711449 (25 bp)
AGGATCCAGATTTCACATGCGGCCA
LOC_Os05g46200
Os.14570.1.S1_at--909--5911Chr05:26711391..26711415 (25 bp)
GAGCATAGATTATTCCCATTCGGTA
LOC_Os05g46200
Os.14570.1.S1_at--201--10171Chr05:26711359..26711383 (25 bp)
TATAGGTTTCTGTGGCATTGTCGCC
LOC_Os05g46200
Os.14570.1.S1_at--87--51Chr05:26711343..26711367 (25 bp)
ATTGTCGCCCAATTCCGGTGAAGGA
LOC_Os05g46200
Os.14570.1.S1_at--121--9531Chr05:26711309..26711333 (25 bp)
TCTCTTCCGCTGTGATTCCACAAAA
LOC_Os05g46200
Os.14570.1.S1_at--402--5751Chr05:26711282..26711306 (25 bp)
GACGGAATTCTACAGTGCATACTAT
LOC_Os05g46200
Target Sequence 
GGATTTCAGAGGAACCGGCATTCTATGAAGGCCATTTTCATATTGACTCTGAATCTGAGAAAAAGGACACATTCATATCA
TTTCGAGGTTGGAATAAAGGAGTCGCTTTTGTGAACAACTTCAACATTGGAAGGTTCTGGCCGGCCATTGGACCACAATG
CGCTCTGTATGTTCCTGCGCCGATCCTCAAACCTGGAGATAATGTCATTGTGATCTTTGAACTGCATAGTCCAAACCCTG
AGCTCACCATCAAGTTAGTGAAGGATCCAGATTTCACATGCGGCCAGTGAAGTTGGAGCATAGATTATTCCCATTCGGTA
TGATTTGTATAGGTTTCTGTGGCATTGTCGCCCAATTCCGGTGAAGGAACATTTCCTTCTCTTCCGCTGTGATTCCACAA
AAATGACGGAATTCTACAGTGCATACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis