Browse Element(s) Details


Os.14584.1.S1_s_at

Description gb:AK059039.1
DB_XREF= gi:32969057
TID=Os.14584.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D01, full insert sequence.
FL= gb:AK059039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3636011/11Poly polymerase central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36340OsAffx.27961.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36340OsAffx.27960.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36349NANA6+21340454..21341106NA
LOC_Os06g36360Os.14584.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360OsAffx.15775.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.14584.1.S1_s_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.16439.1.S1_at2/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36370NANA6+21351883..21352242hypothetical protein
LOC_Os06g36380Os.29923.1.S1_at11/116+21361860..21362651expressed protein
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14584.1.S1_s_at--580--7471Chr06:21343062..21343086 (25 bp)
GTGTGAACTCGGATGCGCCACAGAA
LOC_Os06g36360
Os.14584.1.S1_s_at--105--7891Chr06:21342927..21342951 (25 bp)
GGTTAGTCTGACATCAACTGCATGA
LOC_Os06g36360
Os.14584.1.S1_s_at--788--4971Chr06:21342864..21342888 (25 bp)
GCATCTGCTGGAGGAGTCTATGGTA
LOC_Os06g36360
Os.14584.1.S1_s_at--1091--6411Chr06:21342674..21342698 (25 bp)
GATCTACGGCAAGTTTTACAGAGCT
LOC_Os06g36360
Os.14584.1.S1_s_at--667--2111Chr06:21342630..21342654 (25 bp)
ACATGTGTCGTTTTGTCTTTAACCG
LOC_Os06g36360
Os.14584.1.S1_s_at--478--9551Chr06:21342615..21342639 (25 bp)
TCTTTAACCGTGGAGCATCTAGCTT
LOC_Os06g36360
Os.14584.1.S1_s_at--1025--8291Chr06:21342588..21342612 (25 bp)
GGCTTCATCATTGTATGGGTGCTGA
LOC_Os06g36360
Os.14584.1.S1_s_at--54--7231Chr06:21342537..21342561 (25 bp)
GTCGACCTGTTTGCTTCTCAGAGAT
LOC_Os06g36360
Os.14584.1.S1_s_at--353--3631Chr06:21342509..21342533 (25 bp)
CTTGCCTCTGCTGTAGGTCTAGATT
LOC_Os06g36360
Os.14584.1.S1_s_at--964--10251Chr06:21342457..21342481 (25 bp)
TTTGTTTCTCAATGCTCCTGTGTAC
LOC_Os06g36360
Os.14584.1.S1_s_at--636--6991Chr06:21342436..21342460 (25 bp)
GTACTCGGATCTTCCCTTGTAATAT
LOC_Os06g36360
Target Sequence 
GTGTGAACTCGGATGCGCCACAGAAGGCATCATTGAGGGTTAGTCTGACATCAACTGCATGAGGTTGGAAAACGGTGTAA
AAAGGACAAAAAGATAGAGAGCATCTGCTGGAGGAGTCTATGGTAAGTTGCTCGACTTGCAAAGTTTCCTTTTCGACGCA
GATCTGCAAGCAAGGGGGGCTGTTAAGGGAAGATGGCGATAAGATCATCATGTCAAGCAATGATAAGGGCAGCAATCAGG
GGAGCTTTATTACAGGGAAGATCGTAGAATCCTGTGCTGAGAACCCCCTAGATCTACGGCAAGTTTTACAGAGCTTTGCT
TGTGCTCCATAACGACATGTGTCGTTTTGTCTTTAACCGTGGAGCATCTAGCTTCTGGCTTCATCATTGTATGGGTGCTG
AATTGAACTTGTGTATGGCATCTGTGGGTCGACCTGTTTGCTTCTCAGAGATGCCCTTGCCTCTGCTGTAGGTCTAGATT
ATAGAGATAGCTGCTGTGCTGCTCATCTTTGTTTCTCAATGCTCCTGTGTACTCGGATCTTCCCTTGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14584.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis