Browse Element(s) Details


Os.14645.3.S1_at

Description gb:AK111487.1
DB_XREF= gi:32996700
TID=Os.14645.3
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489G09.21 (P0489G09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G07, full insert sequence.
FL= gb:AK111487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1184011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11820Os.57052.1.S1_at9/115+6708504..6712370transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11826NANA5+6726204..6726498NA
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein
LOC_Os05g11850Os.21343.1.S1_at11/115+6731537..6735668glycoside hydrolase family 47 protein, putative, expressed
LOC_Os05g11860OsAffx.26842.1.S1_at11/115+6740034..6740816Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g11870Os.52111.1.S1_at11/115+6745809..6748287coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os05g11890NANA5+6751322..6751738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11900Os.47329.1.A1_at1/115+6753416..6753801hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14645.3.S1_at--83--4193Chr10:15511673..15511693 (21 bp)
CCCATTGCTTATGCTCTAAGGCTAG
NONE
Os.14645.3.S1_at--728--9511Chr05:6731185..6731209 (25 bp)
TCTAAGGCTAGTTTCACTGTTCCCG
LOC_Os05g11840
Os.14645.3.S1_at--313--1211Chr05:6731194..6731218 (25 bp)
AGTTTCACTGTTCCCGCGACAGAAA
LOC_Os05g11840
Os.14645.3.S1_at--155--751Chr05:6731224..6731248 (25 bp)
ATGTTTGGACAAAGATGGCTTCATA
LOC_Os05g11840
Os.14645.3.S1_at--933--6231Chr05:6731237..6731261 (25 bp)
GATGGCTTCATAAACAGAATCAGAT
LOC_Os05g11840
Os.14645.3.S1_at--51--191Chr05:6731263..6731286 (24 bp)
ATTTCTTCCAAATCACGAGTAACAT
LOC_Os05g11840
Os.14645.3.S1_at--603--1151Chr05:6731280..6731305 (25 bp)
AGTAACATACGGCATTCGGCATATT
LOC_Os05g11840
Os.14645.3.S1_at--636--1931Chr05:6731289..6731313 (25 bp)
ACGGCATTCGGCATATTTTATTCAT
LOC_Os05g11840
Os.14645.3.S1_at--256--331Chr05:6731312..6731336 (25 bp)
ATAAATCTGGAGCACGACAAACGGA
LOC_Os05g11840
Os.14645.3.S1_at--451--8911Chr05:6731369..6731393 (25 bp)
TGAGCATGTCTGATTGCATGACAAT
LOC_Os05g11840
Os.14645.3.S1_at--486--671Chr05:6731386..6731410 (25 bp)
ATGACAATCTGCAGGAAATTTATTC
LOC_Os05g11840
Target Sequence 
CCCATTGCTTATGCTCTAAGGCTAGTTTCACTGTTCCCGCGACAGAAAAAAAGATGTTTGGACAAAGATGGCTTCATAAA
CAGAATCAGATAATTTCTTCCAAATCACGAGTAACATACGGCATTCGGCATATTTTATTCATAAATCTGGAGCACGACAA
ACGGAAATAGAAACTAAGTAGCTTCAATATTCAAGAATGAGCATGTCTGATTGCATGACAATCTGCAGGAAATTTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14645.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis