Browse Element(s) Details


OsAffx.14645.1.S1_x_at

Description tigr:9633.m01049
TID=OsAffx.14645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gibberellin 2 beta-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1181010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11820Os.57052.1.S1_at9/115+6708504..6712370transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g11826NANA5+6726204..6726498NA
LOC_Os05g11832Os.14645.1.S1_s_at11/115+6730115..6730992expressed protein
LOC_Os05g11840Os.14645.3.S1_at11/115+6730150..6731413expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14645.1.S1_x_at--775--6611NONE
GTTGGAGATGTCTTACAGCCAGGTG
NONE
OsAffx.14645.1.S1_x_at--9--3391Chr05:6702818..6702841 (24 bp)
CAGCCAGGTGGTAGAATTAAATTAG
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--1095--9811Chr05:6702797..6702821 (25 bp)
TTAGAGGAACTGCAAGGTTTTCTTC
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--236--5191Chr05:6702786..6702810 (25 bp)
GCAAGGTTTTCTTCATGCCGTGTCG
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--875--1011Chr05:6702783..6702807 (25 bp)
AGGTTTTCTTCATGCCGTGTCGCTC
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--871--3771Chr05:6702756..6702780 (25 bp)
CTCCAGGGCAACACGGGAGGCGACC
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--24--8271Chr05:6702525..6702549 (25 bp)
GGCAGCAGAGCCAGCGTCGCTGTTA
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--694--1631Chr05:6702513..6702537 (25 bp)
AGCGTCGCTGTTAGCGGATCTGGCC
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--197--3791Chr05:6702486..6702510 (25 bp)
CTCGCAGCCAGATCGGGACGAAGTG
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--69--8571Chr05:6702318..6702342 (25 bp)
TGGATCTGGCTCTCCCAGGCCGGAT
LOC_Os05g11810
OsAffx.14645.1.S1_x_at--1119--2591Chr05:6702291..6702315 (25 bp)
AACGCCCGCAGCTGGGCCACGAAGG
LOC_Os05g11810
Target Sequence 
GTTGGAGATGTCTTACAGCCAGGTGGTAGAATTAAATTAGAGGAACTGCAAGGTTTTCTTCATGCCGTGTCGCTCCGCTC
CAGGGCAACACGGGAGGCGACCCGAAGCCGCCCCGCCGCCGGCCTTCTCTCCCTCGCCTCCCCCACCTCGCCGCCGCCTG
AGCAGCCGCCGGCAAAGCCGGACGGCGGCAAGGACGGCGGCGGCGGGGCCTTCTACCCCCTCCAACACCCTGCGGTTGGG
GCCCCGACGGGAAACAGGCGGAGGGGCGGCGACGCGTCGAGGCGGCTCCGGCGACGCCGACGGCCAGAGGCAGCAGAGCC
AGCGTCGCTGTTAGCGGATCTGGCCCCCTCGCAGCCAGATCGGGACGAAGTGGCGCCGGCCGCGCTGCATCAGGACGAGG
CGCTGGCTGGGGCAGTCGTGGCGCCGGCGGAGAAGGCCGCTGGATGGGGCAGTCGCGGCGCGGGCGGAGGCGACGTCGCT
GGCGGCGGGGACGAGGCAGCGAGCCTGGGCGCCGCTGGATCTGGCTCTCCCAGGCCGGATCCAACGCCCGCAGCTGGGCC
ACGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14645.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis