Browse Element(s) Details


Os.54906.1.S1_at

Description gb:AK107068.1
DB_XREF= gi:32992277
TID=Os.54906.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E08, full insert sequence.
FL= gb:AK107068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1179011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54906.1.S1_at--251--4511Chr05:6680909..6680933 (25 bp)
GCCGAGATCTTCGAGGTTTCGCCGT
LOC_Os05g11790
Os.54906.1.S1_at--376--2391Chr05:6680860..6680884 (25 bp)
AAACGGCCGGCGACACGCTGGAGTA
LOC_Os05g11790
Os.54906.1.S1_at--725--8031Chr05:6680841..6680865 (25 bp)
GGAGTACCAGGCGTTCTGCAACAGA
LOC_Os05g11790
Os.54906.1.S1_at--353--9631Chr05:6680812..6680836 (25 bp)
TCAGGCCGTCGCTGAACGACATCTG
LOC_Os05g11790
Os.54906.1.S1_at--402--8711Chr05:6680728..6680752 (25 bp)
TGTCGCCACTGAGTAGTCCTCGGAA
LOC_Os05g11790
Os.54906.1.S1_at--362--5651Chr05:6680696..6680720 (25 bp)
GACAGATTATCTAGGTGCAGTGGCA
LOC_Os05g11790
Os.54906.1.S1_at--319--1271Chr05:6680658..6680682 (25 bp)
AGATATGTGCTGTTTCCCTTGTTGT
LOC_Os05g11790
Os.54906.1.S1_at--207--4311Chr05:6680642..6680666 (25 bp)
CCTTGTTGTTTCCTTTGCTTTGAAT
LOC_Os05g11790
Os.54906.1.S1_at--475--1091Chr05:6680562..6680586 (25 bp)
AGTGGTCTGGTATTTCCAAGTTCAA
LOC_Os05g11790
Os.54906.1.S1_at--727--5272Chr06:2549560..2549788 (25 bp)
GAATGTGTTCTCCTTTTGCTTAAAT
NONE
Os.54906.1.S1_at--138--4971Chr05:6680397..6680421 (25 bp)
GCATCACACCACCATAATATCCAAT
LOC_Os05g11790
Target Sequence 
GCCGAGATCTTCGAGGTTTCGCCGTCGTGCTACGTCGTCGAGGTGAAGAAAACGGCCGGCGACACGCTGGAGTACCAGGC
GTTCTGCAACAGAGACCTCAGGCCGTCGCTGAACGACATCTGCTGGACCTCGCCGGCGACAGCAGCGTCGGAGAAGAACC
AGCTGCCGGCAGTGTCGGAGGTGTCGCCACTGAGTAGTCCTCGGAATTGATGTGACAGATTATCTAGGTGCAGTGGCAGA
TATTGATCATCAGATATGTGCTGTTTCCCTTGTTGTTTCCTTTGCTTTGAATTGTTGTTTTGATTTTTTTTTTATTCTTG
TTTGTGTTTCATAATGATCTTGGGGGTAGTGGTCTGGTATTTCCAAGTTCAAGATGAATTTCAATTATTGTTTTTTTCTG
TTCTTTTGTTGTGTGGTGGACTGGTGGTTTAGTGTTGATTGTTGGACATAGGTGATAGAATGTGTTCTCCTTTTGCTTAA
ATTGCATGGTCCATTTGTAAGGTAAATTAATGGCATCACACCACCATAATATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis