Browse Element(s) Details


OsAffx.26841.1.S1_at

Description tigr:9633.m01048
TID=OsAffx.26841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11820Os.57052.1.S1_at9/115+6708504..6712370transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26841.1.S1_at--521--8671Chr05:6693537..6693561 (25 bp)
TGTGGTGGCTCGCACTCGACTGCTC
LOC_Os05g11800
OsAffx.26841.1.S1_at--497--5111Chr05:6693526..6693550 (25 bp)
GCACTCGACTGCTCATGAATTGGTT
LOC_Os05g11800
OsAffx.26841.1.S1_at--348--9371Chr05:6693522..6693546 (25 bp)
TCGACTGCTCATGAATTGGTTGTTT
LOC_Os05g11800
OsAffx.26841.1.S1_at--619--5191Chr05:6693510..6693534 (25 bp)
GAATTGGTTGTTTATTGCCGGACTG
LOC_Os05g11800
OsAffx.26841.1.S1_at--215--8571Chr05:6693506..6693530 (25 bp)
TGGTTGTTTATTGCCGGACTGTATC
LOC_Os05g11800
OsAffx.26841.1.S1_at--953--6811Chr05:6693501..6693525 (25 bp)
GTTTATTGCCGGACTGTATCATGGG
LOC_Os05g11800
OsAffx.26841.1.S1_at--201--9191Chr05:6693495..6693519 (25 bp)
TGCCGGACTGTATCATGGGAGAGAA
LOC_Os05g11800
OsAffx.26841.1.S1_at--324--7651Chr05:6693479..6693503 (25 bp)
GGGAGAGAATTCTATCCAACTGCTG
LOC_Os05g11800
OsAffx.26841.1.S1_at--730--5211Chr05:6693473..6693497 (25 bp)
GAATTCTATCCAACTGCTGACATCA
LOC_Os05g11800
OsAffx.26841.1.S1_at--1010--10551Chr05:6693470..6693494 (25 bp)
TTCTATCCAACTGCTGACATCAAAG
LOC_Os05g11800
OsAffx.26841.1.S1_at--199--591Chr05:6693466..6693490 (25 bp)
ATCCAACTGCTGACATCAAAGATAT
LOC_Os05g11800
Target Sequence 
TGTGGTGGCTCGCACTCGACTGCTCATGAATTGGTTGTTTATTGCCGGACTGTATCATGGGAGAGAATTCTATCCAACTG
CTGACATCAAAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis