Browse Element(s) Details


Os.11160.1.S2_at

Description gb:AK071500.1
DB_XREF= gi:32981523
TID=Os.11160.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093C11, full insert sequence.
FL= gb:AK063666.1 gb:AK103990.1 gb:AK071500.1 gb:AK059612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1178011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11160.1.S2_at--986--8631Chr05:6679134..6679158 (25 bp)
TGGGTTCTTTGCATCGGCCTGCAGT
LOC_Os05g11780
Os.11160.1.S2_at--345--5031Chr05:6679154..6679178 (25 bp)
GCAGTCTGCCTTTTGACTATGTGAA
LOC_Os05g11780
Os.11160.1.S2_at--820--1291Chr05:6679193..6679217 (25 bp)
AGATGCAACCTGATGCCAGTGGGAA
LOC_Os05g11780
Os.11160.1.S2_at--91--1371Chr05:6679262..6679286 (25 bp)
AGAGCGGTGGCCCATTCAAGTTCTA
LOC_Os05g11780
Os.11160.1.S2_at--689--6591Chr05:6679314..6679429 (25 bp)
GATTGCTCCCCATGTGATGATGACA
LOC_Os05g11780
Os.11160.1.S2_at--193--10131Chr05:6679501..6679525 (25 bp)
TATGCGGAGTTATCATTTGCTCGAG
LOC_Os05g11780
Os.11160.1.S2_at--943--6031Chr05:6679528..6679552 (25 bp)
GAGATAATAACGTTCCAGCTGCTTA
LOC_Os05g11780
Os.11160.1.S2_at--948--4351Chr05:6679542..6679566 (25 bp)
CCAGCTGCTTACACTATCGGTAGTT
LOC_Os05g11780
Os.11160.1.S2_at--1115--6771Chr05:6679595..6679619 (25 bp)
GTTATCCTAGCTTAAATGTTGCCGT
LOC_Os05g11780
Os.11160.1.S2_at--103--9193Chr09:10325903..10325951 (25 bp)
TGCCGTGGTGGTACTATTGTGTCTT
NONE
Os.11160.1.S2_at--950--3671Chr05:6679694..6679718 (25 bp)
CTTTATTTTTGTTGGCTGGGACTCA
LOC_Os05g11780
Target Sequence 
TGGGTTCTTTGCATCGGCCTGCAGTCTGCCTTTTGACTATGTGAAGACACAAATCCAGAAGATGCAACCTGATGCCAGTG
GGAAGTACCCGTACACCGGTTCTTTGGACTGTGCCATGAAGACCTTCAAGAGCGGTGGCCCATTCAAGTTCTACACTGGC
TTCCCTGTGTACTGTGTCAGGATTGCTCCCCATGTGATGATGACATGGATATTCTTGAATCAAATCCAGAAGTTCGAGAA
GCAGATTGGAATATAAGGTCTTCAGTTGGAGGTTAATATGCGGAGTTATCATTTGCTCGAGTGGAGATAATAACGTTCCA
GCTGCTTACACTATCGGTAGTTGGTTTTGGTAGACAAAAGTTTAAACCAAGTTATCCTAGCTTAAATGTTGCCGTGGTGG
TACTATTGTGTCTTTTACAATAATCGAATCATTTGTTGTAACTGGGGCGATTTTTTTGGGGTGGACATACTTTATTTTTG
TTGGCTGGGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11160.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis