Browse Element(s) Details


Os.11160.1.S1_at

Description gb:AK063666.1
DB_XREF= gi:32973684
TID=Os.11160.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C11, full insert sequence.
FL= gb:AK063666.1 gb:AK103990.1 gb:AK071500.1 gb:AK059612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1178010/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11750Os.48931.1.S1_at11/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11750Os.48931.2.S1_at9/115+6645812..6651263Protein kinase domain containing protein, expressed
LOC_Os05g11760OsAffx.4307.1.S1_at11/115+6654523..6655526hypothetical protein
LOC_Os05g11770Os.17859.1.S1_a_at11/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.10381.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11770Os.52782.1.S1_at1/115+6660128..6671932Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os05g11780Os.11160.1.S2_at11/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780Os.11160.1.S1_at10/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11780OsAffx.31123.1.S1_x_at1/115+6675727..6679810Mitochondrial carrier protein, expressed
LOC_Os05g11790Os.54906.1.S1_at11/115+6680368..6682248CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g11800OsAffx.26841.1.S1_at11/115+6692980..6693614hypothetical protein
LOC_Os05g11810OsAffx.14645.1.S1_x_at10/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g11810OsAffx.14645.1.S1_at8/115+6702258..6706288oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11160.1.S1_at--946--7151Chr05:6675758..6675782 (25 bp)
GTCGGCGTTAATAAAGCGCAACGGC
LOC_Os05g11780
Os.11160.1.S1_at--933--2671Chr05:6675771..6675795 (25 bp)
AAGCGCAACGGCAGGCAGCGATCTA
LOC_Os05g11780
Os.11160.1.S1_at--503--931Chr05:6675783..6675807 (25 bp)
AGGCAGCGATCTAGGCGCCCGTCGT
LOC_Os05g11780
Os.11160.1.S1_at--108--9731Chr05:6676889..6676910 (22 bp)
TCAAGGTGAAGATCCAGCTGGGAGA
LOC_Os05g11780
Os.11160.1.S1_at--130--1071Chr05:6676910..6676934 (25 bp)
AGGGATCTGCAGCTCAGGTCACAAA
LOC_Os05g11780
Os.11160.1.S1_at--9--5491Chr05:6676935..6676959 (25 bp)
GAACATGCTTGCTAATGAGGGTATT
LOC_Os05g11780
Os.11160.1.S1_at--30--2111Chr05:6677273..6677294 (22 bp)
ACAAGGGTTTGTCAGCTGGTTTACT
LOC_Os05g11780
Os.11160.1.S1_at--333--4711Chr05:6677284..6677308 (25 bp)
GCTGGTTTACTAAGGCAGGCGACAT
LOC_Os05g11780
Os.11160.1.S1_at--919--2011Chr05:6677292..6677316 (25 bp)
ACTAAGGCAGGCGACATATACTACT
LOC_Os05g11780
Os.11160.1.S1_at--1098--231Chr05:6677307..6677331 (25 bp)
ATATACTACTGCTCGTCTTGGATCC
LOC_Os05g11780
Os.11160.1.S1_at--162--9591NONE
TCTTGGATCCTTCAGGGTTCTGACA
NONE
Target Sequence 
GTCGGCGTTAATAAAGCGCAACGGCAGGCAGCGATCTAGGCGCCCGTCGTCCACTCCTCCTCNCCTTCCTCGCCTTCCTC
GCTTTTATCGCCGCCGCCGCCGCCGCCGCCTCCGCCGCCGCCGAGGAGTAGGAGTAGTAGGAGGAGGAAGCCGGTAGCCG
GAGGAGGAGCGGGGAGATGGCGGACGCGAAGCAGCAGCAGCAGCAGCAGACGGCGGCGGCCGCCACGGGGGTCTGGAAGA
CGGTGAAGCCCTTCGTCAACGGCGGGGCCTCCGGGATGCTCGCCACCTGCGTCATCCAGCCCATCGACATGGTCAAGGTG
AAGATCCAGCTGGGAGAGGGATCTGCAGCTCAGGTCACAAAGAACATGCTTGCTAATGAGGGTATTGGTTCCTTTTACAA
GGGTTTGTCAGCTGGTTTACTAAGGCAGGCGACATATACTACTGCTCGTCTTGGATCCTTCAGGGTTCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis