Browse Element(s) Details


Os.14654.1.S1_at

Description gb:AK101429.1
DB_XREF= gi:32986638
TID=Os.14654.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.14654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038J15, full insert sequence.
FL= gb:AK101429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4274011/11ARI, RING finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein
LOC_Os08g42720Os.5639.1.S1_at11/118+26894750..26899312anthocyanin-related membrane protein 1, putative, expressed
LOC_Os08g42730Os.14174.1.S1_at11/118+26902095..26905995Biotin synthase, putative, expressed
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14654.1.S1_at--1068--5591Chr08:26921526..26921550 (25 bp)
GACAACTCAGATGAAGGCTGGCCTT
LOC_Os08g42740
Os.14654.1.S1_at--359--2951Chr08:26921539..26921563 (25 bp)
AAGGCTGGCCTTGTGAGCGCTGCAC
LOC_Os08g42740
Os.14654.1.S1_at--982--8911Chr08:26921552..26921576 (25 bp)
TGAGCGCTGCACGTTTATTAACCCT
LOC_Os08g42740
Os.14654.1.S1_at--1119--6791Chr08:26921564..26921588 (25 bp)
GTTTATTAACCCTTCATCGGTGGAT
LOC_Os08g42740
Os.14654.1.S1_at--1029--491Chr08:26921579..26921603 (25 bp)
ATCGGTGGATGCATGCAGCGTCTGC
LOC_Os08g42740
Os.14654.1.S1_at--792--9031Chr08:26921592..26921616 (25 bp)
TGCAGCGTCTGCGATAAGCATAGAT
LOC_Os08g42740
Os.14654.1.S1_at--677--1051Chr08:26921675..26921699 (25 bp)
AGGTGGGTGCTTACTCAAAGCTCAT
LOC_Os08g42740
Os.14654.1.S1_at--206--1451Chr08:26921747..26921771 (25 bp)
AGAAGAGCTTCCAATGGCAGCAATG
LOC_Os08g42740
Os.14654.1.S1_at--916--4011Chr08:26921773..26921797 (25 bp)
CGTACATGTGTGAGTGAAGGTCCCT
LOC_Os08g42740
Os.14654.1.S1_at--934--5311Chr08:26921788..26921812 (25 bp)
GAAGGTCCCTGGTTGTATCTAGATT
LOC_Os08g42740
Os.14654.1.S1_at--723--3011Chr08:26921821..26921845 (25 bp)
AATGCAGGACCGACTATGGAGCGAA
LOC_Os08g42740
Target Sequence 
GACAACTCAGATGAAGGCTGGCCTTGTGAGCGCTGCACGTTTATTAACCCTTCATCGGTGGATGCATGCAGCGTCTGCGA
TAAGCATAGATACTAGATGAAAAACTGGCTGAAAGCCAGTGCCCCCCATAAATCTCGAAGCTGTTGAGAAGGTGGGTGCT
TACTCAAAGCTCATGAGAAGATTGTTGATTGTAGTTCTGTTCCTAAATTATGTGGCGTTGAAGAAGAGCTTCCAATGGCA
GCAATGGCGTACATGTGTGAGTGAAGGTCCCTGGTTGTATCTAGATTGCAGCAACAATGCAGGACCGACTATGGAGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis