Browse Element(s) Details


Os.14691.1.S1_at

Description gb:AK059115.1
DB_XREF= gi:32969133
TID=Os.14691.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14691 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E07, full insert sequence.
FL= gb:AK059115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5154011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14691.1.S1_at--966--5951Chr05:29469797..29469821 (25 bp)
GAGAATGATCCTACTTCTTCTACGC
LOC_Os05g51540
Os.14691.1.S1_at--310--5431Chr05:29469737..29469761 (25 bp)
GAACCAATTGTTGCACCCATAAAGG
LOC_Os05g51540
Os.14691.1.S1_at--429--9671Chr05:29469687..29469711 (25 bp)
TCAGCGCCAGCTGTACAAATGGATG
LOC_Os05g51540
Os.14691.1.S1_at--309--3231Chr05:29469648..29469672 (25 bp)
CAAGATCAAGCCACGCGATGCTGCG
LOC_Os05g51540
Os.14691.1.S1_at--711--6051Chr05:29469584..29469608 (25 bp)
GAGTTCATACGAGCAGGATCCCTTC
LOC_Os05g51540
Os.14691.1.S1_at--856--991Chr05:29469570..29469594 (25 bp)
AGGATCCCTTCCAAGCCTATAAGAT
LOC_Os05g51540
Os.14691.1.S1_at--834--10851Chr05:29469528..29469552 (25 bp)
TTGGATCTGTAGTGCTCTTGTGTTT
LOC_Os05g51540
Os.14691.1.S1_at--691--4271Chr05:29469416..29469440 (25 bp)
CCTGTTGAGCTTGATCTCCTGAATT
LOC_Os05g51540
Os.14691.1.S1_at--1106--3171Chr05:29469390..29469414 (25 bp)
AATTGGCTTCTTTCATAGGACATGT
LOC_Os05g51540
Os.14691.1.S1_at--533--3231Chr05:29469358..29469382 (25 bp)
CAAGAAGCCGATTTCTGGGAGGCAT
LOC_Os05g51540
Os.14691.1.S1_at--654--211Chr05:29469300..29469324 (25 bp)
ATTTGGGCTTTTCAGCTATTGGTGC
LOC_Os05g51540
Target Sequence 
GAGAATGATCCTACTTCTTCTACGCCGACCTCATCTCCCGCGGCTGCTGAGAAGCCTGCAGAACCAATTGTTGCACCCAT
AAAGGTGCTCACACCAATCTCCCAAGACGATCAGCGCCAGCTGTACAAATGGATGCTGGAGGAGAAGCGCAAGATCAAGC
CACGCGATGCTGCGGAGAAGAAGAAGATTAACGNGGAGAAGGCCCTTCTCAAAGAGTTCATACGAGCAGGATCCCTTCCA
AGCCTATAAGATCGCCAATTAACTATTATTTGGATCTGTAGTGCTCTTGTGTTTGATGATTGACTGGGAACGGTGCGAGT
TTGATTGTATTTACAAGTCCAGCACTGTAATCAGATTTCCAAATGATAGTTGTGGAAAGACCCTGTTGAGCTTGATCTCC
TGAATTGAATTGGCTTCTTTCATAGGACATGTTGGGTATCAAGAAGCCGATTTCTGGGAGGCATGGAAGATGATGTATGA
AACTATTATCAGTGTTGATTTGGGCTTTTCAGCTATTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis