Browse Element(s) Details


Os.14692.1.S1_at

Description gb:AK119618.1
DB_XREF= gi:37989241
TID=Os.14692.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G12, full insert sequence.
FL= gb:AK119618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1483010/11phosphomevalonate kinase, putative, expressed
LOC_Os06g074001/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14790OsAffx.12864.1.S1_at9/113+8020167..8025808Piwi domain containing protein, expressed
LOC_Os03g14800Os.8513.1.S1_at11/113+8026042..8031600aminotransferase, classes I and II family protein, expressed
LOC_Os03g14810OsAffx.12865.1.S1_at11/113+8040348..8040941myb family transcription factor, putative
LOC_Os03g14820OsAffx.25090.1.S1_at11/113+8043566..8044306hypothetical protein
LOC_Os03g14820OsAffx.9107.1.S1_x_at2/113+8043566..8044306hypothetical protein
LOC_Os03g14830Os.14692.1.S1_at10/113+8046571..8050869phosphomevalonate kinase, putative, expressed
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14692.1.S1_at--838--7751Chr03:8047109..8047302 (25 bp)
GGTGTTCCAATTGAGCCAGAATCAC
LOC_Os03g14830
Os.14692.1.S1_at--1034--5231Chr03:8047091..8047115 (25 bp)
GAATCACAAACTCAACTTCTGGATG
LOC_Os03g14830
Os.14692.1.S1_at--101--1071Chr03:8047051..8047075 (25 bp)
AGGGTGTTCTACTAGCTGGAGTTCC
LOC_Os03g14830
Os.14692.1.S1_at--124--8312Chr06:3557437..3557490 (23 bp)
GGCTTTGATGCAGTTTTCTCAGTGA
LOC_Os06g07400
Os.14692.1.S1_at--257--1111Chr03:8046977..8047001 (25 bp)
AGTGATGCTGTAGCCAAAGCTTGGA
LOC_Os03g14830
Os.14692.1.S1_at--650--1291Chr03:8046918..8046942 (25 bp)
AGATCCCCGAGGTGTTTCATTGGAA
LOC_Os03g14830
Os.14692.1.S1_at--955--1031Chr03:8046871..8046895 (25 bp)
AGGTGTCAACCGCTGTATCATCGAT
LOC_Os03g14830
Os.14692.1.S1_at--84--1891Chr03:8046793..8046817 (25 bp)
ACGTTTGGTGTCTCTTTCATGTAGC
LOC_Os03g14830
Os.14692.1.S1_at--997--911Chr03:8046743..8046767 (25 bp)
AGGCTACACGCGGACATGGTTAAAT
LOC_Os03g14830
Os.14692.1.S1_at--76--8051Chr03:8046587..8046611 (25 bp)
GGAGTTCGGGCCTTTGATTTCAGAA
LOC_Os03g14830
Os.14692.1.S1_at--518--6531Chr03:8046571..8046596 (25 bp)
GATTTCAGAACTCCTGTACAGTTTC
NONE
Target Sequence 
GGTGTTCCAATTGAGCCAGAATCACAAACTCAACTTCTGGATGCCACTATGAATATGGAGGGTGTTCTACTAGCTGGAGT
TCCTGGGGCCGGTGGCTTTGATGCAGTTTTCTCAGTGATTTTNGGTGAAGCAAGTGATGCTGTAGCCAAAGCTTGGAGCT
CAGCTGGTGTTCTCCCTCTTCTTNGTTCGAGAAGATCCCCGAGGTGTTTCATTGGAAGCTGGTGACCCNAGAACANAGGG
AGGTGTCAACCGCTGTATCATCGATACANAATAAANCTGATAATGTTGTTTGAATTCCGTTAGATTTATTCATGATGTGT
ACGTTTGGTGTCTCTTTCATGTAGCACTAGCCNAACATGATATGTTGAAGAGGCTACACGCGGACATGGTTAAATAAGTG
NCTGTGCACGGAGCAAGATATCATGTTGTGACAGATTGATATGATTTAGCCATGTGAAATGCTTGTAACTATTGAATGTA
CGCATAGAATGCCTATTTAAGCATTCCAATAAGCTCAATTATAGGAGTTCGGGCCTTTGATTTCAGAACTCCTGTACAGT
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis