Browse Element(s) Details


Os.14702.1.S1_a_at

Description gb:AK061133.1
DB_XREF= gi:32971151
TID=Os.14702.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A12, full insert sequence.
FL= gb:AK061133.1 gb:AK099198.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1702010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17010Os.27779.1.S1_at11/111+9735221..9741506Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein
LOC_Os01g17030NANA1+9751320..9752575DnaJ domain containing protein
LOC_Os01g17040OsAffx.11084.2.S1_at10/111+9761751..9765259DnaJ domain containing protein, expressed
LOC_Os01g17050OsAffx.22181.1.S1_s_at11/111+9766796..9767815VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14702.1.S1_a_at--755--6611Chr01:9748860..9748884 (25 bp)
GTTGGCAATTCATCCTCCATGATGA
LOC_Os01g17020
Os.14702.1.S1_a_at--849--711Chr01:9748881..9748905 (25 bp)
ATGATCCTTGCGATCATTGTGCTCC
LOC_Os01g17020
Os.14702.1.S1_a_at--371--431Chr01:9748893..9749181 (25 bp)
ATCATTGTGCTCCTCTTTAGTACCA
LOC_Os01g17020
Os.14702.1.S1_a_at--212--3811NONE
CTCCTCTTTAGTACCATCACAGTGA
NONE
Os.14702.1.S1_a_at--441--8471Chr01:9749999..9750023 (25 bp)
TGGCCCTCTCATTCTACGGTGCTAG
LOC_Os01g17020
Os.14702.1.S1_a_at--1104--1911Chr01:9750014..9750038 (25 bp)
ACGGTGCTAGCCAGATTAAGTTCCA
LOC_Os01g17020
Os.14702.1.S1_a_at--784--9211Chr01:9750035..9750059 (25 bp)
TCCACTGGGTGGAACGTTACGACAA
LOC_Os01g17020
Os.14702.1.S1_a_at--1141--7671Chr01:9750092..9750116 (25 bp)
GGGTTTTGACATACGTATTCCATCA
LOC_Os01g17020
Os.14702.1.S1_a_at--160--71Chr01:9750108..9750132 (25 bp)
ATTCCATCACCATGACGGCGACGAA
LOC_Os01g17020
Os.14702.1.S1_a_at--373--8391Chr01:9750124..9750148 (25 bp)
GGCGACGAACACTCTCTCCATGAAC
LOC_Os01g17020
Os.14702.1.S1_a_at--869--9491Chr01:9750138..9750162 (25 bp)
TCTCCATGAACACGTGCACCGGAAA
LOC_Os01g17020
Target Sequence 
GTTGGCAATTCATCCTCCATGATGATCCTTGCGATCATTGTGCTCCTCTTTAGTACCATCACAGTGATGACATCCTTGGT
GGCCCTCTCATTCTACGGTGCTAGCCAGATTAAGTTCCACTGGGTGGAACGTTACGACAAGATCCTTGTCGGCTCGGTCC
TGTGCCTCGTTGGGGTTTTGACATACGTATTCCATCACCATGACGGCGACGAACACTCTCTCCATGAACACGTGCACCGG
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14702.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis