Browse Element(s) Details


Os.51519.1.S1_at

Description gb:AK062999.1
DB_XREF= gi:32973017
TID=Os.51519.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-H01, full insert sequence.
FL= gb:AK062999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g169903/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17010Os.27779.1.S1_at11/111+9735221..9741506Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51519.1.S1_at--585--7313Chr01:9724834..9724858 (25 bp)
GTGCTTTCTCACACTTTGTCAGCCA
LOC_Os01g16990
Os.51519.1.S1_at--740--3013Chr01:9724868..9724892 (25 bp)
AATCCTAACAACCTACTTCTAGCTG
LOC_Os01g16990
Os.51519.1.S1_at--477--1394Chr07:6687476..6687500 (25 bp)
AGACGAGATTTTGGTGCCGCGTACT
NONE
Os.51519.1.S1_at--985--8153Chr01:9725000..9725024 (25 bp)
GGAAAACTACATGCAGACTCGCCAT
NONE
Os.51519.1.S1_at--121--1413Chr01:9725014..9725038 (25 bp)
AGACTCGCCATCTTCTTGTGGGTGT
NONE
Os.51519.1.S1_at--460--6693Chr07:6687580..6687607 (25 bp)
GTTCCAAGACGATGAGTCCGACCGC
NONE
Os.51519.1.S1_at--981--10554Chr07:6687666..6687690 (25 bp)
TTCTTGCACAAGTCCGGCGCTGAGG
NONE
Os.51519.1.S1_at--442--4811Chr12:24689140..24689164 (25 bp)
GCTCGTGAGCTTCCATATTCATCAA
NONE
Os.51519.1.S1_at--5--5391Chr12:24689096..24689120 (25 bp)
GAAGCACGTGCATTGTTCAAGAGTA
NONE
Os.51519.1.S1_at--797--2531Chr12:24689029..24689053 (25 bp)
AACTAGCTGCTGATTGATCTCATGA
NONE
Os.51519.1.S1_at--960--6411Chr12:24689014..24689038 (25 bp)
GATCTCATGAATCACTGGTTCAACT
NONE
Target Sequence 
GTGCTTTCTCACACTTTGTCAGCCACGCCCGNAAAATCCTAACAACCTACTTCTAGCTGCCAACAAACACTCAGAAGATT
GGATCAAATCAGTACACGGAGGAAGACGAGATTTTGGTGCCGCGTACTGCTGCTGCNACTTTTCTGGTTTGTTATCAACA
TAAATAGGAAAACTACATGCAGACTCGCCATCTTCTTGTGGGTGTCGTTCCAAGACGATGAGTCCGACCGCCGCGCTCGC
CATTTTCTCGCGCAAGTCTGGCGCTGGCTGCCGCTCATCGACCATCACCATCTTCTTGCACAAGTCCGGCGCTGAGGCCC
AGCTCGTGAGCTTCCATATTCATCAAGATTTTGTATGGTAATATGGAAGCACGTGCATTGTTCAAGAGTAACCTTTCATC
ATAAACTCAATTGCATTATTTCTGCAGGGGACAACTAGCTGCTGATTGATCTCATGAATCACTGGTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis