Browse Element(s) Details


Os.54420.1.S1_at

Description gb:AK105130.1
DB_XREF= gi:32990339
TID=Os.54420.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F05, full insert sequence.
FL= gb:AK105130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1698010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54420.1.S1_at--410--2111Chr01:9708531..9708555 (25 bp)
ACATGCAGCAAACGCGTGTGTTGAG
LOC_Os01g16980
Os.54420.1.S1_at--261--3291Chr01:9708523..9708547 (25 bp)
CAAACGCGTGTGTTGAGTTTATCAC
LOC_Os01g16980
Os.54420.1.S1_at--264--4671Chr01:9708518..9708542 (25 bp)
GCGTGTGTTGAGTTTATCACACAAT
LOC_Os01g16980
Os.54420.1.S1_at--40--6651Chr01:9708512..9708536 (25 bp)
GTTGAGTTTATCACACAATTAATTA
LOC_Os01g16980
Os.54420.1.S1_at--940--3171Chr01:9708497..9708521 (25 bp)
CAATTAATTAATTTTGCACACAGTA
LOC_Os01g16980
Os.54420.1.S1_at--1072--5111Chr01:9708482..9708506 (25 bp)
GCACACAGTATTAGTAGTACCGCAT
LOC_Os01g16980
Os.54420.1.S1_at--503--6871Chr01:9708475..9708499 (25 bp)
GTATTAGTAGTACCGCATGTATAAC
LOC_Os01g16980
Os.54420.1.S1_at--117--6991Chr01:9708466..9708490 (25 bp)
GTACCGCATGTATAACTAGTAGTAT
LOC_Os01g16980
Os.54420.1.S1_at--1081--6931Chr01:9708448..9708472 (25 bp)
GTAGTATTACATGTAACACTCGTAT
LOC_Os01g16980
Os.54420.1.S1_at--562--7051Chr01:9708436..9708460 (25 bp)
GTAACACTCGTATACATATCAAATT
LOC_Os01g16980
Os.54420.1.S1_at--990--2071Chr01:9708409..9708433 (25 bp)
ACATTATCTTAATGTGATCCTGCTC
NONE
Target Sequence 
ACATGCAGCAAACGCGTGTGTTGAGTTTATCACACAATTAATTAATTTTGCACACAGTATTAGTAGTACCGCATGTATAA
CTAGTAGTATTACATGTAACACTCGTATACATATCAAATTAAACATTATCTTAATGTGATCCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis