Browse Element(s) Details


Os.35540.1.S1_at

Description gb:AK066984.1
DB_XREF= gi:32977002
TID=Os.35540.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091E10, full insert sequence.
FL= gb:AK066984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1700011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17010Os.27779.1.S1_at11/111+9735221..9741506Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein
LOC_Os01g17030NANA1+9751320..9752575DnaJ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35540.1.S1_at--438--5791Chr01:9734414..9734438 (25 bp)
GACGACTTGAGGAGCTTTTCTGTTT
LOC_Os01g17000
Os.35540.1.S1_at--323--351Chr01:9734449..9734473 (25 bp)
ATAAGGATCATACTGCTACCTCCAC
LOC_Os01g17000
Os.35540.1.S1_at--688--8591Chr01:9734479..9734503 (25 bp)
TGGTCACAATGTTTCTATCCAGTGT
LOC_Os01g17000
Os.35540.1.S1_at--452--10131Chr01:9734494..9734518 (25 bp)
TATCCAGTGTGATCTTGAGCTCATA
LOC_Os01g17000
Os.35540.1.S1_at--761--4931Chr01:9734644..9734668 (25 bp)
GCTTGTGATCCGGAGCTCAAAACAT
LOC_Os01g17000
Os.35540.1.S1_at--338--431Chr01:9734681..9734705 (25 bp)
ATCATTAGTCAATAGCTGTCGCTGT
LOC_Os01g17000
Os.35540.1.S1_at--729--5731Chr01:9734765..9734789 (25 bp)
GACTGGCATTCTGACGTTTGTATAT
LOC_Os01g17000
Os.35540.1.S1_at--865--851Chr01:9734810..9734834 (25 bp)
ATGGCTTCTATGTTAACCTGCAGAA
LOC_Os01g17000
Os.35540.1.S1_at--1049--7651Chr01:9734859..9734883 (25 bp)
GGGATCAACTCCGTTTGGACATAAG
LOC_Os01g17000
Os.35540.1.S1_at--1020--1671Chr01:9734890..9734914 (25 bp)
AGCCTAGTTATCTCATTTGCAGCAT
LOC_Os01g17000
Os.35540.1.S1_at--267--10351Chr01:9734920..9734944 (25 bp)
TTTACCCCAAACTAACACCATATCT
LOC_Os01g17000
Target Sequence 
GACGACTTGAGGAGCTTTTCTGTTTGTTTTCTGACATAAGGATCATACTGCTACCTCCACAGGAATGGTCACAATGTTTC
TATCCAGTGTGATCTTGAGCTCATATGTTGCTAGAGCCAGATCAAATCTAGCAACTCAAATCTGGCAGAGTTGCCAGTGA
NGNACTTGGTTCTGTGGTAATGTTTATGTTGATCAAAAANNNNNGCTTCTCCCCAAGGAGAGAATTGTGAGCTTGTGATC
CGGAGCTCAAAACATGCTCCATCTGAAATCATTAGTCAATAGCTGTCGCTGTGATGGAGGTGAAAAGGATAACTGTGAAG
TCTCTTTTTTCTTACTTTCTTTGAATTTTTAGACTGGCATTCTGACGTTTGTATATAGCTTCTCAAAATTCATGTAATGG
CTTCTATGTTAACCTGCAGAAAATGCATAATTTTGTAACTGGATGGGGATCAACTCCGTTTGGACATAAGCAAATCAGCC
TAGTTATCTCATTTGCAGCATTGAAATTTACCCCAAACTAACACCATATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis